Variant report

Variant	rs199802805
Chromosome Location	chr16:46478284-46478285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 106 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:106 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482466	chr16:46385802-46508907	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv572452	chr16:46385922-46498901	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv572453	chr16:46385922-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv572454	chr16:46385922-46499821	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv572455	chr16:46385922-46500009	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv572456	chr16:46385922-46500195	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv572457	chr16:46385922-46500302	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv572458	chr16:46385922-46500451	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv433447	chr16:46386457-46479625	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv572459	chr16:46386457-46539392	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
11	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
12	esv1813432	chr16:46402997-46499280	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	esv1809860	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
14	esv1847123	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	esv1850910	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
16	esv1847006	chr16:46402997-46500451	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
17	esv1812329	chr16:46426950-46499613	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
18	esv2572179	chr16:46427717-46499888	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
19	nsv572460	chr16:46428961-46500195	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
20	nsv572463	chr16:46435905-46498780	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
21	nsv572464	chr16:46435905-46499280	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
22	nsv572465	chr16:46435905-46499331	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
23	nsv572466	chr16:46435905-46499613	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
24	nsv572467	chr16:46435905-46500009	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
25	nsv572468	chr16:46435905-46500195	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
26	esv1802012	chr16:46435905-46500451	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
27	esv1841503	chr16:46435905-46500451	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
28	nsv572469	chr16:46435905-46500451	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
29	esv1795764	chr16:46435905-46640695	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
30	esv1807474	chr16:46435905-46640695	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
31	esv1823645	chr16:46435905-46640695	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
32	esv1832668	chr16:46435905-46640695	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
33	esv1835093	chr16:46435905-46640695	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
34	esv1843221	chr16:46435905-46640695	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
35	nsv572470	chr16:46436691-46499331	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
36	nsv572471	chr16:46436691-46499675	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
37	nsv572472	chr16:46436691-46500195	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	n/a
38	nsv572473	chr16:46436691-46500302	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	n/a
39	nsv572474	chr16:46436691-46500451	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	n/a
40	nsv572476	chr16:46438085-46499613	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
41	nsv572477	chr16:46438085-46500451	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
42	nsv572478	chr16:46438175-46500302	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
43	nsv572480	chr16:46441016-46498780	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
44	nsv572481	chr16:46441016-46500195	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	n/a
45	nsv572482	chr16:46441016-46500302	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
46	nsv572483	chr16:46441016-46500451	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
47	esv6232	chr16:46442154-46499630	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	n/a
48	nsv572484	chr16:46442159-46500451	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
49	nsv572486	chr16:46442349-46498901	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a
50	nsv572488	chr16:46445148-46498780	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links