Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1435456	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16930253	0.82[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs16930256	0.85[EUR][1000 genomes]
rs2043524	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4130998	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4739072	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4739075	0.96[EUR][1000 genomes]
rs4739076	0.91[EUR][1000 genomes]
rs57046961	0.91[EUR][1000 genomes]
rs58706850	0.88[EUR][1000 genomes]
rs58941136	0.91[EUR][1000 genomes]
rs59981119	0.96[EUR][1000 genomes]
rs60515592	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60700277	0.91[EUR][1000 genomes]
rs6991229	0.96[EUR][1000 genomes]
rs7017562	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72621443	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72621447	0.96[EUR][1000 genomes]
rs72621448	0.91[EUR][1000 genomes]
rs73686739	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7463246	0.91[EUR][1000 genomes]
rs7824241	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7833772	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3479368	chr8:64154290-64156126	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3479369	chr8:64154338-64156092	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3479370	chr8:64154360-64156054	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3479371	chr8:64154360-64156054	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv4700	chr8:64154390-64156185	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2043521	TTPA	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64154000-64155000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: