Variant report

Variant	rs7017562
Chromosome Location	chr8:64175348-64175349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:64174035..64175890-chr8:64212804..64213965,8	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1435456	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16930253	0.82[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs2043521	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2043524	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739072	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739075	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4739076	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57046961	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58706850	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58941136	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59981119	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60515592	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60700277	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6991229	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72621443	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72621447	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72621448	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73686739	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463246	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824241	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833772	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1816645	chr8:64161544-64184282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7017562	TTPA	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64173000-64178400	Weak transcription	HSMM	muscle
2	chr8:64174200-64180400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:64174400-64178000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:64174600-64176200	Weak transcription	Primary monocytes fromperipheralblood	blood

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