Variant report

Variant	rs7833772
Chromosome Location	chr8:64177519-64177520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1435456	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16930253	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16930256	0.87[EUR][1000 genomes]
rs2043521	0.98[EUR][1000 genomes]
rs2043524	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241754	0.82[CEU][hapmap]
rs4130998	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739072	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739075	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4739076	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57046961	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58706850	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58941136	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59981119	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60515592	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60700277	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6991229	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7017562	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621443	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72621447	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72621448	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73686739	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463246	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824241	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1816645	chr8:64161544-64184282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64173000-64178400	Weak transcription	HSMM	muscle
2	chr8:64174200-64180400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:64174400-64178000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:64176800-64178200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:64177400-64177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:64177400-64177600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:64177400-64178000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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