Variant report
| Variant | rs72621443 |
|---|---|
| Chromosome Location | chr8:64147448-64147449 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TTPA-8 | chr8:64147195-64147469 | NONHSAT126930 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1435456 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16930253 | 0.85[EUR][1000 genomes] |
| rs16930256 | 0.81[EUR][1000 genomes] |
| rs2043521 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2043524 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4130998 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4739072 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4739075 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4739076 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57046961 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs58706850 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs58941136 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs59981119 | 0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60515592 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60700277 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6991229 | 0.92[EUR][1000 genomes] |
| rs7017562 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72621447 | 0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72621448 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73686739 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7463246 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7824241 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7833772 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831342 | chr8:64084331-64294941 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
