Variant report
| Variant | rs4739076 |
|---|---|
| Chromosome Location | chr8:64194561-64194562 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:64084761..64086536-chr8:64192763..64195667,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1435456 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16930253 | 0.83[EUR][1000 genomes] |
| rs2043521 | 0.91[EUR][1000 genomes] |
| rs2043524 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4130998 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4739072 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4739075 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57046961 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58706850 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58941136 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59981119 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60515592 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs60700277 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6991229 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7017562 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72621443 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72621447 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72621448 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73686739 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7463246 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7824241 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7833772 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831342 | chr8:64084331-64294941 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64193200-64199800 | Weak transcription | H9 Cell Line | embryonic stem cell |
