Variant report

Variant	rs6991229
Chromosome Location	chr8:64185560-64185561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1435456	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16930253	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs16930256	0.85[EUR][1000 genomes]
rs2043521	0.96[EUR][1000 genomes]
rs2043524	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130998	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4739072	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4739075	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4739076	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57046961	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58706850	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58941136	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59981119	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60515592	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60700277	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7017562	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72621443	0.92[EUR][1000 genomes]
rs72621447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72621448	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73686739	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7463246	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7824241	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7833772	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64178800-64192800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:64183600-64187200	Weak transcription	HSMM	muscle
3	chr8:64184200-64186800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:64184600-64186800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:64184800-64186000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:64184800-64186000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:64185200-64186400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:64185200-64186800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:64185400-64186400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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