Variant report

Variant	rs2133192
Chromosome Location	chr6:76406086-76406087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:76405218..76407618-chr6:76430939..76433858,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1018103	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10943273	0.81[EUR][1000 genomes]
rs12525161	0.81[EUR][1000 genomes]
rs13191639	0.81[EUR][1000 genomes]
rs13214795	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2647399	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2647401	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2647402	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2647403	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2647409	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2647412	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2647413	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2647415	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647416	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2647418	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2647419	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2748953	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2748965	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2783351	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784730	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784732	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2784733	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842535	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842539	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2842563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842571	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2842572	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34239015	0.81[EUR][1000 genomes]
rs478934	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs486777	0.81[ASN][1000 genomes]
rs570939	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs575720	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6453832	0.82[AFR][1000 genomes]
rs649935	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6907247	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6911868	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6936251	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6936565	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356806	0.82[EUR][1000 genomes]
rs775071	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294001	0.82[EUR][1000 genomes]
rs9350598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359137	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9447524	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv1022428	chr6:76023118-76575620	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv538312	chr6:76023118-76575620	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
5	nsv1032245	chr6:76045537-76545703	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
6	nsv538313	chr6:76045537-76545703	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
7	nsv1019328	chr6:76154751-76604197	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv538314	chr6:76154751-76604197	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1023331	chr6:76238459-76482117	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv538315	chr6:76238459-76482117	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
11	nsv1017542	chr6:76238459-76537447	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
12	nsv1031745	chr6:76257913-76493355	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv538316	chr6:76257913-76493355	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv533100	chr6:76257914-76493354	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
15	nsv1023749	chr6:76287578-76482117	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
16	nsv538317	chr6:76287578-76482117	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
18	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
19	nsv886184	chr6:76320846-76462711	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv886185	chr6:76320846-76498109	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv886186	chr6:76328955-76469115	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
23	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
24	esv3335869	chr6:76389281-76411862	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	esv3332890	chr6:76390281-76414581	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2133192	SENP6	cis	Whole Blood	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76382000-76422800	Weak transcription	Stomach Mucosa	stomach
2	chr6:76391000-76406800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:76391400-76410400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:76391400-76417200	Weak transcription	Gastric	stomach
5	chr6:76391400-76421200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:76391400-76426600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:76391600-76419200	Weak transcription	Right Ventricle	heart
8	chr6:76391600-76427200	Weak transcription	Small Intestine	intestine
9	chr6:76392000-76406200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:76392000-76406600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:76392000-76407000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:76392000-76410000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:76392000-76410400	Weak transcription	Brain Angular Gyrus	brain
14	chr6:76392000-76412200	Weak transcription	HepG2	liver
15	chr6:76392000-76412400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:76392000-76421400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:76392000-76423400	Weak transcription	NHEK	skin
18	chr6:76392000-76423800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:76392200-76406200	Weak transcription	A549	lung
20	chr6:76392200-76407600	Weak transcription	Fetal Brain Male	brain
21	chr6:76392200-76407800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:76392200-76420400	Weak transcription	Fetal Heart	heart
23	chr6:76392200-76421000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:76392200-76426800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:76392400-76406200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:76393000-76409800	Weak transcription	Psoas Muscle	Psoas
27	chr6:76395200-76420200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:76396800-76414600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:76396800-76414600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr6:76396800-76414800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:76397000-76411400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:76397000-76413400	Strong transcription	Fetal Thymus	thymus
33	chr6:76397200-76415800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:76397200-76418000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:76397400-76413600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:76397400-76414000	Strong transcription	Dnd41	blood
37	chr6:76397400-76415000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:76397400-76430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:76398000-76421000	Weak transcription	K562	blood
40	chr6:76398000-76428200	Weak transcription	Colonic Mucosa	Colon
41	chr6:76398200-76406800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:76398200-76417200	Weak transcription	Spleen	Spleen
43	chr6:76398400-76410200	Weak transcription	Esophagus	oesophagus
44	chr6:76398400-76411400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:76398400-76425400	Weak transcription	Pancreas	Pancrea
46	chr6:76399800-76409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:76399800-76426200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:76400000-76407800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:76400000-76409600	Weak transcription	Lung	lung
50	chr6:76400000-76410000	Weak transcription	HSMMtube	muscle

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