Variant report

Variant	rs2230590
Chromosome Location	chr3:49936102-49936103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:49935975-49936122	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:49936077-49936131	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr3:49936018-49936173	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:49936013-49936176	MCF10A-Er-Src	breast:	n/a	chr3:49936138-49936148 chr3:49936139-49936147 chr3:49936138-49936148 chr3:49936140-49936151
5	STAT3	chr3:49936058-49936205	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr3:49935892-49936157	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:49935827..49937610-chr3:49975872..49978554,2	K562	blood:
2	chr3:49933351..49938041-chr3:49938966..49942332,9	K562	blood:
3	chr3:49839049..49842350-chr3:49936029..49940414,4	K562	blood:
4	chr3:49927426..49930206-chr3:49934919..49938158,3	K562	blood:

Variant related genes	Relation type
ENSG00000230698	TF binding region
MST1R	TF binding region
ENSG00000164078	Chromatin interaction
ENSG00000185614	Chromatin interaction
ENSG00000228008	Chromatin interaction
ENSG00000004534	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10049087	0.93[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs1062633	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130226	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130228	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130229	0.83[ASN][1000 genomes]
rs11130233	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11130234	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11709573	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs11712056	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs11713193	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11713562	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11925192	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12485600	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496973	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12634780	0.82[JPT][hapmap]
rs13060128	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1317154	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1491986	0.81[CEU][hapmap]
rs17657664	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs17657688	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2013208	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap]
rs2234391	0.83[CHB][hapmap]
rs2240326	0.93[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs2240327	0.85[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs2240328	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2240329	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs2245365	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2246832	0.83[CHB][hapmap]
rs2247510	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2252833	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2271960	0.83[CHB][hapmap]
rs2271961	0.83[CHB][hapmap]
rs2280406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2352969	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2352974	0.83[CHB][hapmap]
rs2352984	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2353579	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353586	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2353587	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2526747	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2526748	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs2526751	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2526754	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs2624819	0.82[JPT][hapmap]
rs2624821	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2624822	0.82[JPT][hapmap]
rs2624824	0.88[CEU][hapmap]
rs2624834	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2624843	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2624844	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2624853	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap]
rs2681778	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2681779	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2681780	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2681781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2777888	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2883057	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2883059	0.88[CHD][hapmap];0.82[JPT][hapmap]
rs34080578	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35065728	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3733135	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774733	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774734	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs3774758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774759	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs3796386	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs4688689	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688690	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688753	0.82[JPT][hapmap]
rs4688755	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4688756	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4688757	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688758	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55751738	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262093	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6446187	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6446189	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6446193	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs6762477	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6765484	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6767381	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6771546	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6772095	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774354	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6775384	0.83[CHB][hapmap]
rs6780731	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6792892	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795703	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802890	0.83[CHB][hapmap]
rs695238	0.92[CHB][hapmap]
rs7061	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs72942333	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430334	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7609971	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7613875	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615206	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7621026	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621352	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7627864	0.82[JPT][hapmap]
rs7628058	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634084	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635002	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7645061	0.83[CHB][hapmap]
rs7648987	0.83[CHB][hapmap]
rs868891	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs9311446	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs952594	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs9810125	0.82[ASN][1000 genomes]
rs9814664	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[ASN][1000 genomes]
rs9821433	0.87[ASN][1000 genomes]
rs9821675	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9843653	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9848497	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9853222	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861216	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9862795	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866695	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv834688	chr3:49811115-50019299	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv876766	chr3:49817450-49961780	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs2230590	RBM6	cis	Thyroid	GTEx
rs2230590	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs2230590	RBM6	cis	Heart Left Ventricle	GTEx
rs2230590	RBM6	cis	lymphoblastoid	seeQTL
rs2230590	RBM6	cis	Esophagus Muscularis	GTEx
rs2230590	RBM6	cis	Artery Tibial	GTEx
rs2230590	RBM6	cis	cerebellum	SCAN
rs2230590	RBM6	cis	Nerve Tibial	GTEx
rs2230590	RNF123	cis	parietal	SCAN
rs2230590	FAM212A	cis	Esophagus Mucosa	GTEx
rs2230590	RBM6	cis	Esophagus Mucosa	GTEx
rs2230590	RBM6	cis	Artery Aorta	GTEx
rs2230590	RBM6	cis	parietal	SCAN
rs2230590	RBM6	cis	Stomach	GTEx
rs2230590	RBM6	cis	Whole Blood	GTEx
rs2230590	RNF123	cis	cerebellum	SCAN
rs2230590	RBM6	cis	Adipose Subcutaneous	GTEx
rs2230590	RBM6	cis	Skin Sun Exposed Lower leg	GTEx
rs2230590	ARIH2	cis	cerebellum	SCAN
rs2230590	RBM6	cis	lung	GTEx
rs2230590	ACTBP13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49919600-49937800	Weak transcription	Small Intestine	intestine
2	chr3:49920000-49943000	Weak transcription	Brain Anterior Caudate	brain
3	chr3:49920200-49938400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:49920400-49938200	Weak transcription	Left Ventricle	heart
5	chr3:49920600-49938200	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:49920600-49938200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:49924000-49937600	Strong transcription	Fetal Stomach	stomach
8	chr3:49924600-49937600	Weak transcription	K562	blood
9	chr3:49924800-49938200	Weak transcription	Right Ventricle	heart
10	chr3:49925200-49941200	Weak transcription	Brain Germinal Matrix	brain
11	chr3:49926600-49938400	Weak transcription	Aorta	Aorta
12	chr3:49927000-49938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:49927400-49936800	Weak transcription	Fetal Thymus	thymus
14	chr3:49927400-49937600	Weak transcription	Placenta	Placenta
15	chr3:49927600-49940400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:49928600-49943000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:49929000-49938400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:49929600-49941200	Weak transcription	Ovary	ovary
19	chr3:49931400-49936200	Strong transcription	Gastric	stomach
20	chr3:49931400-49938400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:49931400-49943600	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:49931800-49936400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr3:49931800-49936400	Strong transcription	Fetal Intestine Large	intestine
24	chr3:49931800-49936400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr3:49932400-49936400	Strong transcription	Fetal Intestine Small	intestine
26	chr3:49932400-49936400	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:49932600-49936200	Strong transcription	Colonic Mucosa	Colon
28	chr3:49933200-49938200	Weak transcription	Adipose Nuclei	Adipose
29	chr3:49933400-49939600	Weak transcription	Fetal Brain Female	brain
30	chr3:49933800-49941400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:49934200-49938600	Weak transcription	Fetal Lung	lung
32	chr3:49934400-49941400	Weak transcription	Brain Angular Gyrus	brain
33	chr3:49934600-49936400	Weak transcription	Pancreas	Pancrea
34	chr3:49934800-49936800	Weak transcription	A549	lung
35	chr3:49935200-49937600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:49935400-49937200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:49935400-49937400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:49935400-49937800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr3:49935400-49940000	Weak transcription	Spleen	Spleen
40	chr3:49935600-49936600	Genic enhancers	Stomach Mucosa	stomach
41	chr3:49935600-49937400	Weak transcription	HepG2	liver
42	chr3:49935800-49936200	Genic enhancers	Hela-S3	cervix
43	chr3:49935800-49936200	Genic enhancers	NHEK	skin
44	chr3:49935800-49936600	Genic enhancers	Rectal Mucosa Donor 31	rectum
45	chr3:49935800-49937600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:49936000-49936200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:49936000-49936200	Genic enhancers	Esophagus	oesophagus
48	chr3:49936000-49936200	Weak transcription	Lung	lung
49	chr3:49936000-49936800	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:49936000-49936800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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