Variant report

Variant	rs4688689
Chromosome Location	chr3:50035542-50035543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10049087	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1061474	0.90[CHD][hapmap]
rs1062633	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11130224	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130226	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130229	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130233	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130234	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1138536	0.90[CHD][hapmap]
rs11709573	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs11712056	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs11713193	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11713562	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11925192	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12485600	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634780	0.82[JPT][hapmap]
rs13060128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317154	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17657664	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs17657688	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2008877	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap]
rs2013208	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[ASN][1000 genomes]
rs2071206	0.80[EUR][1000 genomes]
rs2230590	0.85[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2234391	0.83[CHB][hapmap]
rs2240326	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2240327	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2240328	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2240329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2245365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2246832	0.83[CHB][hapmap]
rs2247510	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2252833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2271960	0.83[CHB][hapmap]
rs2271961	0.83[CHB][hapmap]
rs2280406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2301166	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2352969	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2352974	0.83[CHB][hapmap]
rs2352984	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2353579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2353586	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2353587	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2526743	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2526747	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs2526748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2526751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2526754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2624816	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2624819	0.82[JPT][hapmap]
rs2624821	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2624822	0.82[JPT][hapmap]
rs2624823	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2624824	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2624825	0.81[EUR][1000 genomes]
rs2624826	0.90[CHD][hapmap]
rs2624834	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2624843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2624844	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2624847	0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs2624853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2681778	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681779	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs2681780	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2681781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2777888	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs2856234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2856236	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];0.93[TSI][hapmap]
rs2856237	0.90[CHD][hapmap]
rs2856238	0.90[CHD][hapmap]
rs2883057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2883059	0.88[CHD][hapmap];0.82[JPT][hapmap]
rs34080578	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34831713	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35065728	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3733133	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3733135	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3774733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774734	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs3774758	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3774759	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs3796386	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs4688690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688753	0.82[JPT][hapmap]
rs4688755	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4688756	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4688757	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55751738	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62262093	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446187	0.92[ASN][1000 genomes]
rs6446189	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446190	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6446193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446202	0.82[JPT][hapmap]
rs66851636	0.86[EUR][1000 genomes]
rs6762477	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6765484	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6767381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6772095	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774354	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs6775384	0.83[CHB][hapmap]
rs6780731	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792892	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795703	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs695238	0.92[CHB][hapmap]
rs7061	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs72942333	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7428430	0.86[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7430334	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7609971	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7613875	0.93[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615206	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7621026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7621352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7627864	0.82[JPT][hapmap]
rs7628058	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634084	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634917	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7635002	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7642692	0.82[JPT][hapmap]
rs7645061	0.83[CHB][hapmap]
rs7648987	0.83[CHB][hapmap]
rs7650214	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs868891	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs9311446	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952594	0.90[CHD][hapmap];0.82[JPT][hapmap]
rs9810125	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9814664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9821433	0.87[ASN][1000 genomes]
rs9821675	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9843653	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9848497	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9853222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9856572	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9861216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9862795	0.93[ASN][1000 genomes]
rs9866695	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9881008	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876767	chr3:49918751-50153356	Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv834689	chr3:49962930-50085119	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1012903	chr3:49978765-50071878	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv460527	chr3:50028385-50153356	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv590249	chr3:50028385-50153356	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs4688689	RBM6	cis	cerebellum	SCAN
rs4688689	RBM6	cis	Adipose Subcutaneous	GTEx
rs4688689	RNF123	cis	parietal	SCAN
rs4688689	RBM6	cis	Stomach	GTEx
rs4688689	RBM6	cis	Whole Blood	GTEx
rs4688689	RBM6	cis	Heart Left Ventricle	GTEx
rs4688689	RBM6	cis	parietal	SCAN
rs4688689	RBM6	cis	Esophagus Muscularis	GTEx
rs4688689	RBM6	cis	Artery Tibial	GTEx
rs4688689	RBM6	cis	Thyroid	GTEx
rs4688689	RBM6	cis	Esophagus Mucosa	GTEx
rs4688689	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs4688689	RBM6	cis	Artery Aorta	GTEx
rs4688689	RBM6	cis	Skin Sun Exposed Lower leg	GTEx
rs4688689	RBM6	cis	Nerve Tibial	GTEx
rs4688689	RNF123	cis	cerebellum	SCAN
rs4688689	CYB561D2	cis	cerebellum	SCAN
rs4688689	RBM6	cis	lymphoblastoid	seeQTL
rs4688689	RBM6	cis	lung	GTEx
rs4688689	ARIH2	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49978800-50041000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:49992200-50037000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:49998000-50078200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:49998400-50078600	Weak transcription	K562	blood
5	chr3:50002200-50057000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:50004400-50044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:50005000-50036800	Weak transcription	Small Intestine	intestine
8	chr3:50005200-50046400	Weak transcription	Psoas Muscle	Psoas
9	chr3:50005200-50050600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:50005400-50036800	Weak transcription	Brain Anterior Caudate	brain
11	chr3:50006000-50064000	Weak transcription	Stomach Mucosa	stomach
12	chr3:50006200-50040800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:50008600-50050400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:50010800-50087000	Weak transcription	NHLF	lung
15	chr3:50011000-50036600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:50011000-50036800	Weak transcription	Brain Angular Gyrus	brain
17	chr3:50011000-50037000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:50011000-50041000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:50011000-50046400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:50011000-50046400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:50011000-50048400	Weak transcription	A549	lung
22	chr3:50011000-50051000	Weak transcription	Pancreas	Pancrea
23	chr3:50011000-50078400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:50011000-50091600	Weak transcription	Colonic Mucosa	Colon
25	chr3:50011400-50035800	Weak transcription	Lung	lung
26	chr3:50012400-50049000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr3:50014800-50035800	Weak transcription	NHDF-Ad	bronchial
28	chr3:50015200-50092000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:50015400-50046400	Weak transcription	Fetal Kidney	kidney
30	chr3:50015800-50041000	Weak transcription	HSMMtube	muscle
31	chr3:50016000-50040800	Weak transcription	Brain Substantia Nigra	brain
32	chr3:50016600-50036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:50016800-50037200	Weak transcription	Hela-S3	cervix
34	chr3:50017800-50035800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:50018800-50043600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:50022200-50046400	Weak transcription	Gastric	stomach
37	chr3:50022600-50041200	Weak transcription	Aorta	Aorta
38	chr3:50022800-50036600	Weak transcription	Spleen	Spleen
39	chr3:50023000-50035800	Weak transcription	NH-A	brain
40	chr3:50023000-50036800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:50023000-50037000	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:50023000-50037200	Weak transcription	HepG2	liver
43	chr3:50024400-50035800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr3:50025200-50035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:50025800-50035600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr3:50025800-50035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:50025800-50036200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr3:50026200-50036600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr3:50026200-50037000	Weak transcription	Brain Germinal Matrix	brain
50	chr3:50026400-50035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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