Variant report

Variant rs3774759
Chromosome Location chr3:49939120-49939121
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49920000-49943000 Weak transcription Brain Anterior Caudate brain
2 chr3:49925200-49941200 Weak transcription Brain Germinal Matrix brain
3 chr3:49927600-49940400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr3:49928600-49943000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr3:49929600-49941200 Weak transcription Ovary ovary
6 chr3:49931400-49943600 Weak transcription Brain Hippocampus Middle brain
7 chr3:49933400-49939600 Weak transcription Fetal Brain Female brain
8 chr3:49933800-49941400 Weak transcription Brain Inferior Temporal Lobe brain
9 chr3:49934400-49941400 Weak transcription Brain Angular Gyrus brain
10 chr3:49935400-49940000 Weak transcription Spleen Spleen
11 chr3:49936200-49941000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr3:49936400-49940800 Enhancers Pancreas Pancrea
13 chr3:49936800-49939600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr3:49937000-49940800 Enhancers Sigmoid Colon Sigmoid Colon
15 chr3:49937400-49940200 Enhancers Breast Myoepithelial Primary Cells Breast
16 chr3:49937600-49940800 Enhancers K562 blood
17 chr3:49937600-49941000 Enhancers Placenta Placenta
18 chr3:49937600-49943200 Active TSS Rectal Smooth Muscle rectum
19 chr3:49937800-49939200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr3:49937800-49939400 Enhancers Small Intestine intestine
21 chr3:49937800-49940400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
22 chr3:49938000-49939200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr3:49938000-49939400 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr3:49938000-49939600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr3:49938000-49940000 Genic enhancers Fetal Intestine Small intestine
26 chr3:49938000-49941400 Enhancers GM12878-XiMat blood
27 chr3:49938200-49939200 Flanking Active TSS Fetal Intestine Large intestine
28 chr3:49938200-49939200 Flanking Active TSS Fetal Thymus thymus
29 chr3:49938200-49939200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
30 chr3:49938200-49939200 Flanking Active TSS Rectal Mucosa Donor 31 rectum
31 chr3:49938200-49939200 Enhancers Skeletal Muscle Male skeletal muscle
32 chr3:49938200-49939200 Enhancers NHDF-Ad bronchial
33 chr3:49938200-49940600 Enhancers Fetal Stomach stomach
34 chr3:49938200-49940800 Enhancers Fetal Muscle Leg muscle
35 chr3:49938200-49941800 Flanking Active TSS HMEC breast
36 chr3:49938400-49940800 Enhancers Colon Smooth Muscle Colon
37 chr3:49938400-49941000 Enhancers Fetal Muscle Trunk muscle
38 chr3:49938600-49940000 Enhancers Fetal Lung lung
39 chr3:49938600-49940000 Enhancers Dnd41 blood
40 chr3:49938600-49941200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr3:49938800-49939400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr3:49938800-49939400 Enhancers Esophagus oesophagus
43 chr3:49938800-49939400 Enhancers Stomach Smooth Muscle stomach
44 chr3:49938800-49939400 Active TSS NHEK skin
45 chr3:49938800-49939600 Active TSS Colonic Mucosa Colon
46 chr3:49938800-49939600 Active TSS Duodenum Mucosa Duodenum
47 chr3:49938800-49939800 Weak transcription Placenta Amnion Placenta Amnion
48 chr3:49938800-49940200 Weak transcription Adipose Nuclei Adipose
49 chr3:49938800-49940400 Weak transcription Right Ventricle heart
50 chr3:49938800-49940600 Enhancers A549 lung

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