Variant report

Variant	rs2248456
Chromosome Location	chr10:89792371-89792372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2673813	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673814	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673815	1.00[CEU][hapmap];0.84[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673817	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673818	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673819	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673820	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673821	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673822	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673826	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs760177	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2248456	LIPN	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89796800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
3	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:89789000-89793200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:89789200-89793400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:89789400-89792400	Weak transcription	NHEK	skin
8	chr10:89790600-89793400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:89791000-89793400	Weak transcription	Fetal Intestine Small	intestine
10	chr10:89791000-89795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:89791000-89795400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:89791000-89796400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:89791600-89792800	Enhancers	Fetal Stomach	stomach
14	chr10:89791800-89793800	Enhancers	NHDF-Ad	bronchial
15	chr10:89792000-89792400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:89792000-89792800	Enhancers	HSMM	muscle
17	chr10:89792000-89792800	Enhancers	NH-A	brain
18	chr10:89792000-89793000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:89792000-89793000	Enhancers	NHLF	lung
20	chr10:89792000-89793400	Enhancers	Osteobl	bone
21	chr10:89792000-89793800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:89792200-89792400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:89792200-89793000	Enhancers	A549	lung
24	chr10:89792200-89793000	Enhancers	HSMMtube	muscle
25	chr10:89792200-89793200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:89792200-89793200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:89792200-89793200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:89792200-89793200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:89792200-89794200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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