Variant report

Variant	rs2673818
Chromosome Location	chr10:89794384-89794385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620225..89623411-chr10:89793964..89797679,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2248456	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2673814	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673815	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673817	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673820	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673826	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs760177	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89796800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
3	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:89791000-89795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:89791000-89795400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:89791000-89796400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:89792800-89797400	Weak transcription	Fetal Stomach	stomach
9	chr10:89792800-89797600	Weak transcription	NH-A	brain
10	chr10:89793000-89797400	Weak transcription	NHLF	lung
11	chr10:89793000-89799000	Weak transcription	A549	lung
12	chr10:89793200-89797600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:89793200-89799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:89793400-89794600	Enhancers	Fetal Intestine Large	intestine
15	chr10:89793400-89798200	Weak transcription	Osteobl	bone
16	chr10:89793800-89795400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:89793800-89797400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:89793800-89797600	Weak transcription	NHDF-Ad	bronchial
19	chr10:89794000-89795200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:89794200-89799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links