Variant report

Variant	rs2673813
Chromosome Location	chr10:89801899-89801900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89621356..89623996-chr10:89801457..89803659,3	MCF-7	breast:
2	chr10:89800688..89804155-chr10:89807111..89810895,5	MCF-7	breast:
3	chr10:89620950..89624389-chr10:89798936..89802585,4	MCF-7	breast:
4	chr10:89800523..89803853-chr10:89848283..89850995,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227905	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2248456	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673814	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673815	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673817	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2673819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2673820	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2673821	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673822	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673826	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2673813	LIPN	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89798200-89802200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:89798400-89804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:89798400-89805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr10:89798600-89802000	Weak transcription	Thymus	Thymus
5	chr10:89798600-89802200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:89799400-89803400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89800800-89802800	Enhancers	NH-A	brain
8	chr10:89800800-89803600	Enhancers	Adipose Nuclei	Adipose
9	chr10:89801000-89802800	Enhancers	Fetal Heart	heart
10	chr10:89801200-89802000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:89801200-89802000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:89801200-89802000	Enhancers	K562	blood
13	chr10:89801200-89802200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:89801200-89802200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:89801200-89802400	Enhancers	Fetal Lung	lung
16	chr10:89801200-89802400	Enhancers	Right Atrium	heart
17	chr10:89801200-89802600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:89801200-89802600	Enhancers	Aorta	Aorta
19	chr10:89801200-89802800	Enhancers	Osteobl	bone
20	chr10:89801200-89803000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:89801200-89803200	Enhancers	Fetal Intestine Large	intestine
22	chr10:89801200-89803600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:89801200-89803600	Enhancers	Fetal Intestine Small	intestine
24	chr10:89801200-89803600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:89801200-89804400	Enhancers	Placenta	Placenta
26	chr10:89801400-89802200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:89801400-89802200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:89801400-89802200	Enhancers	HMEC	breast
29	chr10:89801400-89802400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:89801400-89802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:89801400-89802400	Enhancers	Duodenum Mucosa	Duodenum
32	chr10:89801400-89803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:89801400-89803400	Enhancers	Psoas Muscle	Psoas
34	chr10:89801400-89804200	Enhancers	Fetal Thymus	thymus
35	chr10:89801600-89802000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:89801600-89802000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr10:89801600-89802200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:89801600-89802200	Enhancers	Stomach Mucosa	stomach
39	chr10:89801600-89802200	Flanking Active TSS	HSMMtube	muscle
40	chr10:89801600-89802200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr10:89801600-89802400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr10:89801600-89802400	Enhancers	Liver	Liver
43	chr10:89801600-89802400	Enhancers	Fetal Muscle Trunk	muscle
44	chr10:89801600-89802400	Enhancers	Lung	lung
45	chr10:89801600-89802800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:89801600-89802800	Enhancers	Left Ventricle	heart
47	chr10:89801600-89802800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:89801600-89803000	Enhancers	Pancreas	Pancrea
49	chr10:89801600-89803000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr10:89801600-89803000	Enhancers	HSMM	muscle

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