Variant report

Variant	rs2673815
Chromosome Location	chr10:89796841-89796842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620225..89623411-chr10:89793964..89797679,4	MCF-7	breast:
2	chr10:89620982..89624449-chr10:89796720..89799905,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2248456	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673813	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673814	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2673817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673818	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673819	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673820	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673821	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673822	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673826	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534182	0.83[JPT][hapmap]
rs559783	0.83[JPT][hapmap]
rs563675	0.84[JPT][hapmap]
rs683763	0.84[JPT][hapmap]
rs760177	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
2	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:89792800-89797400	Weak transcription	Fetal Stomach	stomach
5	chr10:89792800-89797600	Weak transcription	NH-A	brain
6	chr10:89793000-89797400	Weak transcription	NHLF	lung
7	chr10:89793000-89799000	Weak transcription	A549	lung
8	chr10:89793200-89797600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:89793200-89799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:89793400-89798200	Weak transcription	Osteobl	bone
11	chr10:89793800-89797400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:89793800-89797600	Weak transcription	NHDF-Ad	bronchial
13	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
14	chr10:89794200-89799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:89795200-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:89795200-89798600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:89795400-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:89796200-89797400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:89796400-89798200	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:89796800-89798200	Enhancers	Primary T cells from cord blood	blood
21	chr10:89796800-89798200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr10:89796800-89798800	Enhancers	Dnd41	blood

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