Variant report

Variant	rs2673822
Chromosome Location	chr10:89793086-89793087
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2248456	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673813	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2673814	0.82[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673815	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673817	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2673818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2673821	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673826	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs760177	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2673822	LIPN	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89796800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr10:89788800-89797200	Weak transcription	Fetal Thymus	thymus
3	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:89789000-89793200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:89789200-89793400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:89789200-89797600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:89790600-89793400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:89791000-89793400	Weak transcription	Fetal Intestine Small	intestine
9	chr10:89791000-89795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:89791000-89795400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:89791000-89796400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:89791800-89793800	Enhancers	NHDF-Ad	bronchial
13	chr10:89792000-89793400	Enhancers	Osteobl	bone
14	chr10:89792000-89793800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:89792200-89793200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:89792200-89793200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:89792200-89793200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:89792200-89793200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:89792200-89794200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:89792400-89793400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:89792800-89797400	Weak transcription	Fetal Stomach	stomach
22	chr10:89792800-89797600	Weak transcription	NH-A	brain
23	chr10:89793000-89793600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:89793000-89797400	Weak transcription	NHLF	lung
25	chr10:89793000-89799000	Weak transcription	A549	lung

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