The 2.0 version of rSNPBase

Variant report

Variant rs225704
Chromosome Location chr6:142533999-142534000
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:142489000-142543200 Weak transcription Small Intestine intestine
2 chr6:142496600-142546800 Weak transcription NHLF lung
3 chr6:142510400-142534000 Weak transcription Placenta Amnion Placenta Amnion
4 chr6:142510400-142534200 Weak transcription Brain Cingulate Gyrus brain
5 chr6:142510800-142534600 Weak transcription Hela-S3 cervix
6 chr6:142515400-142541800 Weak transcription Psoas Muscle Psoas
7 chr6:142517200-142535400 Weak transcription Colon Smooth Muscle Colon
8 chr6:142518000-142534400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr6:142518000-142534400 Weak transcription Spleen Spleen
10 chr6:142519000-142534400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr6:142519600-142535200 Strong transcription Primary T helper cells PMA-I stimulated --
12 chr6:142519600-142541800 Strong transcription HSMM muscle
13 chr6:142521600-142542600 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr6:142523000-142543000 Weak transcription Stomach Mucosa stomach
15 chr6:142523200-142534600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr6:142526000-142535800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr6:142527400-142534200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr6:142527400-142535800 Strong transcription Primary T cells fromperipheralblood blood
19 chr6:142528200-142534200 Weak transcription NHEK skin
20 chr6:142528400-142535200 ZNF genes & repeats Fetal Lung lung
21 chr6:142528600-142534600 Weak transcription Muscle Satellite Cultured Cells --
22 chr6:142530800-142534400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr6:142531000-142534000 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr6:142531000-142534000 Strong transcription Duodenum Smooth Muscle Duodenum
25 chr6:142531000-142535000 ZNF genes & repeats Primary B cells from cord blood blood
26 chr6:142531000-142535200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr6:142531000-142535400 Strong transcription Primary T cells from cord blood blood
28 chr6:142531000-142535800 Strong transcription Rectal Mucosa Donor 29 rectum
29 chr6:142531000-142536400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr6:142531000-142537200 Strong transcription Liver Liver
31 chr6:142531200-142535200 ZNF genes & repeats Primary B cells from peripheral blood blood
32 chr6:142531200-142535200 Strong transcription Rectal Mucosa Donor 31 rectum
33 chr6:142531200-142536000 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr6:142531400-142535200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr6:142531400-142535800 Strong transcription Primary T helper naive cells from peripheral blood blood
36 chr6:142531400-142537200 Strong transcription Primary T helper cells fromperipheralblood blood
37 chr6:142531600-142535200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
38 chr6:142531800-142535400 ZNF genes & repeats Fetal Intestine Large intestine
39 chr6:142531800-142535600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr6:142532200-142535200 Strong transcription Placenta Placenta
41 chr6:142532400-142543000 Weak transcription Fetal Brain Male brain
42 chr6:142532600-142534600 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr6:142532800-142534800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
44 chr6:142532800-142535000 Strong transcription HUES48 Cell Line embryonic stem cell
45 chr6:142532800-142535000 ZNF genes & repeats Primary hematopoietic stem cells blood
46 chr6:142532800-142535600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr6:142532800-142535600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr6:142532800-142536000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr6:142532800-142536000 Strong transcription Breast Myoepithelial Primary Cells Breast
50 chr6:142533000-142534000 Strong transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015