The 2.0 version of rSNPBase

Variant report

Variant rs225705
Chromosome Location chr6:142535403-142535404
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:142489000-142543200 Weak transcription Small Intestine intestine
2 chr6:142496600-142546800 Weak transcription NHLF lung
3 chr6:142515400-142541800 Weak transcription Psoas Muscle Psoas
4 chr6:142519600-142541800 Strong transcription HSMM muscle
5 chr6:142521600-142542600 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr6:142523000-142543000 Weak transcription Stomach Mucosa stomach
7 chr6:142526000-142535800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr6:142527400-142535800 Strong transcription Primary T cells fromperipheralblood blood
9 chr6:142531000-142535800 Strong transcription Rectal Mucosa Donor 29 rectum
10 chr6:142531000-142536400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr6:142531000-142537200 Strong transcription Liver Liver
12 chr6:142531200-142536000 Strong transcription Primary T helper naive cells fromperipheralblood blood
13 chr6:142531400-142535800 Strong transcription Primary T helper naive cells from peripheral blood blood
14 chr6:142531400-142537200 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr6:142531800-142535600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr6:142532400-142543000 Weak transcription Fetal Brain Male brain
17 chr6:142532800-142535600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr6:142532800-142535600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr6:142532800-142536000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr6:142532800-142536000 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr6:142533000-142535800 Strong transcription Primary T regulatory cells fromperipheralblood blood
22 chr6:142533000-142535800 ZNF genes & repeats Brain Germinal Matrix brain
23 chr6:142533000-142535800 Strong transcription A549 lung
24 chr6:142533000-142535800 Strong transcription HSMMtube muscle
25 chr6:142533000-142535800 Strong transcription Osteobl bone
26 chr6:142533000-142536000 Strong transcription Adipose Nuclei Adipose
27 chr6:142533000-142536000 Strong transcription Stomach Smooth Muscle stomach
28 chr6:142533000-142536200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr6:142533200-142535800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr6:142533200-142543200 Weak transcription HMEC breast
31 chr6:142533400-142535800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
32 chr6:142533400-142535800 Strong transcription Skeletal Muscle Female skeletal muscle
33 chr6:142533400-142536200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr6:142533600-142535800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr6:142533600-142535800 Strong transcription Rectal Smooth Muscle rectum
36 chr6:142533600-142536000 Strong transcription Fetal Adrenal Gland Adrenal Gland
37 chr6:142533800-142535600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr6:142533800-142541600 Weak transcription K562 blood
39 chr6:142534000-142538000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr6:142534200-142535800 Strong transcription Pancreas Pancrea
41 chr6:142534200-142541600 Weak transcription Fetal Kidney kidney
42 chr6:142534400-142535600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr6:142534400-142535800 Strong transcription Duodenum Smooth Muscle Duodenum
44 chr6:142534400-142536400 Weak transcription Placenta Amnion Placenta Amnion
45 chr6:142534800-142535600 Strong transcription Fetal Muscle Trunk muscle
46 chr6:142534800-142535800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
47 chr6:142534800-142535800 Strong transcription Sigmoid Colon Sigmoid Colon
48 chr6:142534800-142537400 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr6:142534800-142538200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr6:142534800-142539600 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015