Variant report

Variant	rs225728
Chromosome Location	chr6:142555704-142555705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11758623	0.83[ASN][1000 genomes]
rs178783	0.86[ASN][1000 genomes]
rs225650	0.83[ASN][1000 genomes]
rs225651	0.83[ASN][1000 genomes]
rs225652	0.83[ASN][1000 genomes]
rs225653	0.82[ASN][1000 genomes]
rs225654	0.83[ASN][1000 genomes]
rs225655	0.83[ASN][1000 genomes]
rs225658	0.83[ASN][1000 genomes]
rs225659	0.82[ASN][1000 genomes]
rs225660	0.83[ASN][1000 genomes]
rs225661	0.80[ASN][1000 genomes]
rs225662	0.83[ASN][1000 genomes]
rs225663	0.83[ASN][1000 genomes]
rs225664	0.83[ASN][1000 genomes]
rs225665	0.83[ASN][1000 genomes]
rs225666	0.83[ASN][1000 genomes]
rs225667	0.83[ASN][1000 genomes]
rs225668	0.83[ASN][1000 genomes]
rs225670	0.83[ASN][1000 genomes]
rs225671	0.83[ASN][1000 genomes]
rs225672	0.83[ASN][1000 genomes]
rs225673	0.83[ASN][1000 genomes]
rs225674	0.86[ASN][1000 genomes]
rs225675	0.86[ASN][1000 genomes]
rs225676	0.85[ASN][1000 genomes]
rs225677	0.82[ASN][1000 genomes]
rs225678	0.83[ASN][1000 genomes]
rs225679	0.86[ASN][1000 genomes]
rs225680	0.86[ASN][1000 genomes]
rs225682	0.86[ASN][1000 genomes]
rs225683	0.86[ASN][1000 genomes]
rs225684	0.86[ASN][1000 genomes]
rs225685	0.86[ASN][1000 genomes]
rs225686	0.86[ASN][1000 genomes]
rs225687	0.86[ASN][1000 genomes]
rs225689	0.88[ASN][1000 genomes]
rs225690	0.86[ASN][1000 genomes]
rs225692	0.86[ASN][1000 genomes]
rs225693	0.86[ASN][1000 genomes]
rs225695	0.86[ASN][1000 genomes]
rs225696	0.86[ASN][1000 genomes]
rs225697	0.86[ASN][1000 genomes]
rs225698	0.86[ASN][1000 genomes]
rs225700	0.86[ASN][1000 genomes]
rs225701	0.86[ASN][1000 genomes]
rs225702	0.83[ASN][1000 genomes]
rs225704	0.86[ASN][1000 genomes]
rs225705	0.86[ASN][1000 genomes]
rs225706	0.86[ASN][1000 genomes]
rs225707	0.86[ASN][1000 genomes]
rs225708	0.86[ASN][1000 genomes]
rs225709	0.85[ASN][1000 genomes]
rs225710	0.85[ASN][1000 genomes]
rs56185739	0.83[ASN][1000 genomes]
rs62430506	0.86[ASN][1000 genomes]
rs638804	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5511	chr6:142550032-142594960	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142553600-142556600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:142554000-142556400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:142554200-142556400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:142554800-142556400	Weak transcription	HepG2	liver

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