Variant report

Variant	rs2373188
Chromosome Location	chr2:37386482-37386483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37370415..37372075-chr2:37384482..37387450,2	K562	blood:
2	chr2:37385156..37387851-chr2:37415682..37418467,2	K562	blood:
3	chr2:37382848..37386165-chr2:37386168..37391618,9	MCF-7	breast:
4	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
5	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
6	chr2:37385569..37388130-chr2:37422191..37423882,2	K562	blood:
7	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055332	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000224891	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10177315	1.00[ASN][1000 genomes]
rs10177345	1.00[AFR][1000 genomes]
rs10194972	1.00[ASN][1000 genomes]
rs11892108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425846	1.00[ASN][1000 genomes]
rs2307472	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307474	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2372443	1.00[ASN][1000 genomes]
rs3856498	1.00[ASN][1000 genomes]
rs4233920	1.00[ASN][1000 genomes]
rs4648150	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648153	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648156	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648158	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648160	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648163	0.86[EUR][1000 genomes]
rs4648166	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648169	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648170	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648171	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648190	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648191	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648196	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648199	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648212	1.00[ASN][1000 genomes]
rs4648216	1.00[ASN][1000 genomes]
rs4648218	1.00[ASN][1000 genomes]
rs4648219	1.00[ASN][1000 genomes]
rs4648234	1.00[ASN][1000 genomes]
rs4648237	1.00[ASN][1000 genomes]
rs55679447	1.00[ASN][1000 genomes]
rs55939105	1.00[ASN][1000 genomes]
rs62621388	1.00[ASN][1000 genomes]
rs6544054	1.00[ASN][1000 genomes]
rs6544055	1.00[ASN][1000 genomes]
rs6720519	1.00[ASN][1000 genomes]
rs6726403	1.00[ASN][1000 genomes]
rs6734153	1.00[ASN][1000 genomes]
rs6740307	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568925	1.00[ASN][1000 genomes]
rs7590377	1.00[ASN][1000 genomes]
rs759668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37384800-37387200	Weak transcription	Esophagus	oesophagus
2	chr2:37385000-37386600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:37385000-37386600	Enhancers	Brain Angular Gyrus	brain
4	chr2:37385000-37386600	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:37385000-37387200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:37385000-37388400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:37385800-37389000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:37386400-37386600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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