Variant report

Variant	rs11892108
Chromosome Location	chr2:37385451-37385452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:37370415..37372075-chr2:37384482..37387450,2	K562	blood:
2	chr2:37385156..37387851-chr2:37415682..37418467,2	K562	blood:
3	chr2:37374955..37377720-chr2:37382756..37385654,3	MCF-7	breast:
4	chr2:37373517..37380041-chr2:37380520..37385811,10	MCF-7	breast:
5	chr2:37381640..37387428-chr2:37421417..37425727,6	MCF-7	breast:
6	chr2:37375493..37378915-chr2:37383921..37387868,3	K562	blood:
7	chr2:37383967..37386325-chr2:37457482..37459560,2	MCF-7	breast:
8	chr2:37382658..37387385-chr2:37421093..37425812,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224891	Chromatin interaction
ENSG00000055332	Chromatin interaction
ENSG00000138068	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000233159	Chromatin interaction
ENSG00000003509	Chromatin interaction
ENSG00000115816	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10170761	1.00[CHB][hapmap]
rs10177315	1.00[ASN][1000 genomes]
rs10194972	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11892180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896614	1.00[CHB][hapmap]
rs13388882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414561	1.00[CHB][hapmap]
rs13425846	1.00[ASN][1000 genomes]
rs13429945	1.00[CHB][hapmap]
rs17410072	1.00[CHB][hapmap]
rs2307472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307474	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2307483	1.00[CHB][hapmap]
rs2372443	1.00[ASN][1000 genomes]
rs2373114	1.00[CHB][hapmap]
rs2373188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3856498	1.00[ASN][1000 genomes]
rs4233920	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs4648150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648158	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648160	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648163	0.86[EUR][1000 genomes]
rs4648166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648190	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4648202	1.00[CHB][hapmap]
rs4648212	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4648216	1.00[ASN][1000 genomes]
rs4648218	1.00[ASN][1000 genomes]
rs4648219	1.00[ASN][1000 genomes]
rs4648234	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs4648237	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55679447	1.00[ASN][1000 genomes]
rs55939105	1.00[ASN][1000 genomes]
rs62621388	1.00[ASN][1000 genomes]
rs6544054	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6544055	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6720519	1.00[ASN][1000 genomes]
rs6726403	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6726768	1.00[CHB][hapmap]
rs6726921	1.00[CHB][hapmap]
rs6733861	1.00[CHB][hapmap]
rs6734153	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6740307	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749793	1.00[CHB][hapmap]
rs6754376	1.00[CHB][hapmap]
rs7556959	1.00[CHB][hapmap]
rs7559558	1.00[CHB][hapmap]
rs7568925	1.00[ASN][1000 genomes]
rs7590377	1.00[ASN][1000 genomes]
rs759460	1.00[CHB][hapmap]
rs759668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309005	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326671	chr2:37383073-37385621	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37384600-37385800	Enhancers	Brain Substantia Nigra	brain
2	chr2:37384800-37385600	Enhancers	Adipose Nuclei	Adipose
3	chr2:37384800-37385600	Enhancers	Fetal Intestine Small	intestine
4	chr2:37384800-37385600	Enhancers	NHEK	skin
5	chr2:37384800-37385800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:37384800-37385800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:37384800-37386000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:37384800-37386000	Enhancers	Brain Hippocampus Middle	brain
9	chr2:37384800-37387200	Weak transcription	Esophagus	oesophagus
10	chr2:37385000-37385600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:37385000-37385600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:37385000-37385600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr2:37385000-37385600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr2:37385000-37385600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr2:37385000-37385600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:37385000-37385600	Enhancers	Dnd41	blood
17	chr2:37385000-37385600	Enhancers	GM12878-XiMat	blood
18	chr2:37385000-37385800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr2:37385000-37385800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:37385000-37385800	Enhancers	Brain Anterior Caudate	brain
21	chr2:37385000-37385800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr2:37385000-37386000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:37385000-37386600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:37385000-37386600	Enhancers	Brain Angular Gyrus	brain
25	chr2:37385000-37386600	Enhancers	Brain Cingulate Gyrus	brain
26	chr2:37385000-37387200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:37385000-37388400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:37385200-37386000	Bivalent Enhancer	HepG2	liver
29	chr2:37385200-37386200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:37385400-37386000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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