Variant report

Variant	rs55939105
Chromosome Location	chr2:37419676-37419677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:37419675-37419834	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:37193543..37195604-chr2:37419400..37421969,2	K562	blood:
2	chr2:37416928..37419854-chr2:37422137..37424726,5	K562	blood:
3	chr2:37417209..37421178-chr2:37422730..37425028,3	MCF-7	breast:
4	chr2:37414854..37419854-chr2:37421416..37424726,5	K562	blood:

Variant related genes	Relation type
SULT6B1	TF binding region
CEBPZ-AS1	TF binding region
ENSG00000233159	Chromatin interaction
ENSG00000115808	Chromatin interaction
ENSG00000218739	Chromatin interaction
ENSG00000138068	Chromatin interaction

rs_ID	r²[population]
rs10177315	1.00[ASN][1000 genomes]
rs10194972	1.00[ASN][1000 genomes]
rs11892108	1.00[ASN][1000 genomes]
rs11892180	1.00[ASN][1000 genomes]
rs11894496	1.00[ASN][1000 genomes]
rs13388882	1.00[ASN][1000 genomes]
rs13425846	1.00[ASN][1000 genomes]
rs2307472	1.00[ASN][1000 genomes]
rs2307474	1.00[ASN][1000 genomes]
rs2372443	1.00[ASN][1000 genomes]
rs2373188	1.00[ASN][1000 genomes]
rs3856498	1.00[ASN][1000 genomes]
rs4233920	1.00[ASN][1000 genomes]
rs4648150	1.00[ASN][1000 genomes]
rs4648153	1.00[ASN][1000 genomes]
rs4648156	1.00[ASN][1000 genomes]
rs4648158	1.00[ASN][1000 genomes]
rs4648160	1.00[ASN][1000 genomes]
rs4648166	1.00[ASN][1000 genomes]
rs4648169	1.00[ASN][1000 genomes]
rs4648170	1.00[ASN][1000 genomes]
rs4648171	1.00[ASN][1000 genomes]
rs4648175	1.00[ASN][1000 genomes]
rs4648190	1.00[ASN][1000 genomes]
rs4648191	1.00[ASN][1000 genomes]
rs4648196	1.00[ASN][1000 genomes]
rs4648199	1.00[ASN][1000 genomes]
rs4648212	1.00[ASN][1000 genomes]
rs4648216	1.00[ASN][1000 genomes]
rs4648218	1.00[ASN][1000 genomes]
rs4648219	1.00[ASN][1000 genomes]
rs4648234	1.00[ASN][1000 genomes]
rs4648237	1.00[ASN][1000 genomes]
rs55679447	1.00[ASN][1000 genomes]
rs62621388	1.00[ASN][1000 genomes]
rs6544054	1.00[ASN][1000 genomes]
rs6544055	1.00[ASN][1000 genomes]
rs6720519	1.00[ASN][1000 genomes]
rs6726403	1.00[ASN][1000 genomes]
rs6734153	1.00[ASN][1000 genomes]
rs6740307	1.00[ASN][1000 genomes]
rs7568925	1.00[ASN][1000 genomes]
rs7590377	1.00[ASN][1000 genomes]
rs759668	1.00[ASN][1000 genomes]
rs759669	1.00[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs55939105	PRKD3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37416200-37420200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:37416200-37420400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:37416400-37420400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:37416600-37419800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:37416600-37420200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:37416600-37420200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:37416600-37420400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:37416800-37420200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:37416800-37423200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:37417000-37420200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:37417200-37423200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:37417200-37423200	Weak transcription	Pancreas	Pancrea
13	chr2:37417400-37423200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr2:37417400-37423200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:37417800-37423200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr2:37417800-37423200	Weak transcription	NH-A	brain
17	chr2:37418000-37423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:37418000-37423200	Weak transcription	A549	lung
19	chr2:37418000-37423200	Weak transcription	Hela-S3	cervix
20	chr2:37418000-37423200	Weak transcription	HMEC	breast
21	chr2:37418000-37423400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:37418200-37423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:37418200-37423400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:37418400-37423200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:37418400-37423200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:37418400-37423200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr2:37418600-37427200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:37418800-37422400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr2:37419200-37420000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:37419200-37421000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:37419200-37423000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:37419200-37423200	Weak transcription	Esophagus	oesophagus
33	chr2:37419200-37423200	Weak transcription	Spleen	Spleen
34	chr2:37419200-37423400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:37419200-37423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:37419200-37423600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr2:37419400-37419800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:37419400-37423200	Weak transcription	Primary B cells from cord blood	blood

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