Variant report

Variant	rs2421467
Chromosome Location	chr11:33992938-33992939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33959032..33959816-chr11:33992356..33993177,2	K562	blood:
2	chr11:33829487..33830424-chr11:33992296..33993010,3	K562	blood:
3	chr11:33888050..33890886-chr11:33991516..33993297,2	K562	blood:
4	chr11:33857028..33857671-chr11:33992292..33993130,2	MCF-7	breast:
5	chr11:33888770..33892282-chr11:33990792..33993297,3	K562	blood:
6	chr11:33992659..33993278-chr4:85372646..85373266,2	MCF-7	breast:
7	chr11:33879085..33880119-chr11:33992259..33993178,5	MCF-7	breast:
8	chr11:33878140..33879025-chr11:33992385..33992998,2	K562	blood:
9	chr11:33885094..33885726-chr11:33992532..33993193,2	MCF-7	breast:
10	chr11:33877921..33880595-chr11:33992729..33995031,2	K562	blood:
11	chr11:33992595..33994153-chr11:34125657..34127905,2	MCF-7	breast:
12	chr11:33856727..33857538-chr11:33992307..33993289,4	K562	blood:
13	chr11:33879047..33880255-chr11:33992290..33993369,17	K562	blood:
14	chr11:33879105..33880102-chr11:33992125..33993189,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135363	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10430951	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10444269	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10444270	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742309	0.89[ASN][1000 genomes]
rs10768037	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10768038	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10768039	0.95[ASN][1000 genomes]
rs10836133	0.95[ASN][1000 genomes]
rs10836134	0.95[ASN][1000 genomes]
rs10836135	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12099099	0.82[YRI][hapmap]
rs12273291	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1518920	0.96[EUR][1000 genomes]
rs2176611	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2421454	0.95[ASN][1000 genomes]
rs2901432	0.95[ASN][1000 genomes]
rs4755352	0.93[ASN][1000 genomes]
rs4755353	0.95[ASN][1000 genomes]
rs4755354	0.94[ASN][1000 genomes]
rs4756086	0.80[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs4756088	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4996144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61199722	0.91[ASN][1000 genomes]
rs6484681	0.94[ASN][1000 genomes]
rs6484682	0.92[ASN][1000 genomes]
rs6484683	0.94[ASN][1000 genomes]
rs6484684	0.95[ASN][1000 genomes]
rs6484685	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484686	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6484687	0.94[ASN][1000 genomes]
rs7104709	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7127154	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs713310	0.94[ASN][1000 genomes]
rs7481489	0.95[ASN][1000 genomes]
rs7926558	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7940280	0.94[ASN][1000 genomes]
rs939038	0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33992000-33993200	Enhancers	K562	blood
2	chr11:33992400-33993000	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:33992400-33993000	Enhancers	Brain Hippocampus Middle	brain
4	chr11:33992400-33993200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:33992400-33993200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:33992400-33993200	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:33992400-33993200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:33992400-33993200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:33992400-33993200	Enhancers	Adipose Nuclei	Adipose
10	chr11:33992400-33993200	Enhancers	Fetal Lung	lung
11	chr11:33992400-33993200	Enhancers	Placenta	Placenta
12	chr11:33992400-33993200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:33992600-33993000	Enhancers	Fetal Thymus	thymus
14	chr11:33992600-33993000	Enhancers	Ovary	ovary
15	chr11:33992800-33993000	Enhancers	A549	lung
16	chr11:33992800-33993000	Enhancers	Hela-S3	cervix
17	chr11:33992800-33993000	Flanking Bivalent TSS/Enh	HepG2	liver
18	chr11:33992800-33993000	Bivalent Enhancer	HSMM	muscle
19	chr11:33992800-33993200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:33992800-33993200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:33992800-33993200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:33992800-33993200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
23	chr11:33992800-33993400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:33992800-33993400	Enhancers	Fetal Intestine Large	intestine
25	chr11:33992800-33993400	Enhancers	Fetal Intestine Small	intestine
26	chr11:33992800-33993400	Enhancers	Fetal Stomach	stomach

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