Variant report

Variant	rs7481489
Chromosome Location	chr11:33982085-33982086
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33889585..33894557-chr11:33980286..33986096,7	K562	blood:
2	chr11:33980192..33982667-chr11:33983352..33985978,2	MCF-7	breast:
3	chr11:33896740..33899029-chr11:33980801..33982742,2	K562	blood:

Variant related genes	Relation type
ENSG00000135363	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10430951	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444269	0.91[ASN][1000 genomes]
rs10444270	0.91[ASN][1000 genomes]
rs10742309	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10768037	0.90[ASN][1000 genomes]
rs10768038	1.00[ASN][1000 genomes]
rs10768039	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836133	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836134	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273291	0.90[ASN][1000 genomes]
rs2176611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421454	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421467	0.95[ASN][1000 genomes]
rs2901432	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755352	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755353	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755354	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756086	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4756088	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4996144	0.95[ASN][1000 genomes]
rs61199722	0.90[ASN][1000 genomes]
rs6484681	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484682	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484683	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484684	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484685	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6484686	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6484687	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7104709	0.86[ASN][1000 genomes]
rs7120375	0.85[EUR][1000 genomes]
rs7127154	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs713310	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926558	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940280	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs939038	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33981200-33983200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:33981200-33983200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:33981400-33982600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:33981400-33982600	Enhancers	Spleen	Spleen
5	chr11:33981400-33982800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:33981400-33982800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:33981400-33983000	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:33981400-33983000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:33981400-33985600	Enhancers	K562	blood
10	chr11:33981800-33982800	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links