Variant report

Variant	rs4756086
Chromosome Location	chr11:33977261-33977262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33970294..33973020-chr11:33976765..33978279,2	K562	blood:
2	chr11:33964506..33969329-chr11:33972347..33977315,5	K562	blood:
3	chr11:33890163..33892598-chr11:33974129..33977949,5	K562	blood:
4	chr11:33966632..33969329-chr11:33975815..33978294,2	K562	blood:
5	chr11:33890162..33892453-chr11:33974729..33977918,3	K562	blood:
6	chr11:33890641..33892697-chr11:33977002..33979863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135363	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10430951	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10444269	0.95[ASN][1000 genomes]
rs10444270	0.95[ASN][1000 genomes]
rs10742309	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10768037	0.94[ASN][1000 genomes]
rs10768038	0.95[ASN][1000 genomes]
rs10768039	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836133	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836134	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12273291	0.94[ASN][1000 genomes]
rs2176611	0.96[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421454	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421467	0.80[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2901432	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755352	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4755353	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755354	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756088	0.92[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4996144	0.80[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs61199722	0.86[ASN][1000 genomes]
rs6484681	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484683	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484684	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484685	0.95[ASN][1000 genomes]
rs6484686	0.88[ASN][1000 genomes]
rs6484687	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7104709	0.90[ASN][1000 genomes]
rs7120375	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7127154	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs713310	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481489	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926558	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7940280	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4756086	PAMR1	cis	cerebellum	SCAN
rs4756086	DCDC1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33974600-33977400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:33975200-33978400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:33975200-33978600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:33975600-33977800	Weak transcription	HUVEC	blood vessel
5	chr11:33976600-33981400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:33977000-33978400	Weak transcription	K562	blood
7	chr11:33977200-33981200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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