Variant report

Variant	rs4996144
Chromosome Location	chr11:33993283-33993284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33888050..33890886-chr11:33991516..33993297,2	K562	blood:
2	chr11:33888770..33892282-chr11:33990792..33993297,3	K562	blood:
3	chr11:33877921..33880595-chr11:33992729..33995031,2	K562	blood:
4	chr11:33992595..33994153-chr11:34125657..34127905,2	MCF-7	breast:
5	chr11:33856727..33857538-chr11:33992307..33993289,4	K562	blood:
6	chr11:33879047..33880255-chr11:33992290..33993369,17	K562	blood:

Variant related genes	Relation type
ENSG00000135372	Chromatin interaction
ENSG00000135363	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10430951	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10444269	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10444270	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742309	0.89[ASN][1000 genomes]
rs10768037	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10768038	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10768039	0.95[ASN][1000 genomes]
rs10836133	0.95[ASN][1000 genomes]
rs10836134	0.95[ASN][1000 genomes]
rs10836135	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12099099	0.81[YRI][hapmap]
rs12273291	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1518920	0.97[EUR][1000 genomes]
rs2176611	0.93[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2421454	0.95[ASN][1000 genomes]
rs2421467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901432	0.95[ASN][1000 genomes]
rs4755352	0.93[ASN][1000 genomes]
rs4755353	0.95[ASN][1000 genomes]
rs4755354	0.94[ASN][1000 genomes]
rs4756086	0.80[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs4756088	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs61199722	0.91[ASN][1000 genomes]
rs6484681	0.94[ASN][1000 genomes]
rs6484682	0.92[ASN][1000 genomes]
rs6484683	0.94[ASN][1000 genomes]
rs6484684	0.95[ASN][1000 genomes]
rs6484685	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484686	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6484687	0.94[ASN][1000 genomes]
rs7104709	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7127154	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs713310	0.94[ASN][1000 genomes]
rs7481489	0.95[ASN][1000 genomes]
rs7926558	0.93[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7940280	0.94[ASN][1000 genomes]
rs939038	0.80[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4996144	DCDC1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33992800-33993400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:33992800-33993400	Enhancers	Fetal Intestine Large	intestine
3	chr11:33992800-33993400	Enhancers	Fetal Intestine Small	intestine
4	chr11:33992800-33993400	Enhancers	Fetal Stomach	stomach
5	chr11:33993000-33993400	Bivalent Enhancer	HepG2	liver
6	chr11:33993000-33998200	Weak transcription	Hela-S3	cervix
7	chr11:33993200-33993400	Flanking Active TSS	Placenta	Placenta
8	chr11:33993200-33997800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:33993200-33998000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:33993200-33998000	Weak transcription	Fetal Lung	lung

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