The 2.0 version of rSNPBase

Variant report

Variant rs2422141
Chromosome Location chr1:172402127-172402128
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172373000-172411800 Weak transcription Brain Angular Gyrus brain
2 chr1:172385800-172411000 Weak transcription Fetal Stomach stomach
3 chr1:172391000-172410600 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:172391000-172412200 Weak transcription HSMMtube muscle
5 chr1:172391400-172409400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:172391800-172411000 Weak transcription Spleen Spleen
7 chr1:172392000-172412200 Weak transcription Right Ventricle heart
8 chr1:172392200-172411000 Weak transcription Left Ventricle heart
9 chr1:172395600-172412200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:172395800-172402800 Enhancers Primary T killer naive cells fromperipheralblood blood
11 chr1:172396200-172412000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:172396400-172402800 Enhancers Primary T helper cells fromperipheralblood blood
13 chr1:172396600-172402200 Enhancers Primary T killer memory cells from peripheral blood blood
14 chr1:172396600-172411000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:172396600-172412400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:172396800-172411600 Weak transcription Primary hematopoietic stem cells blood
17 chr1:172396800-172412200 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:172397000-172402600 Weak transcription GM12878-XiMat blood
19 chr1:172397000-172410000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:172397000-172411000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr1:172397200-172402200 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:172398800-172402200 Enhancers Primary T cells fromperipheralblood blood
23 chr1:172398800-172411000 Weak transcription Aorta Aorta
24 chr1:172399000-172407600 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr1:172399000-172411600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
26 chr1:172399200-172410800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:172399400-172407000 Weak transcription Fetal Brain Female brain
28 chr1:172399800-172402200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
29 chr1:172400800-172402200 Enhancers HepG2 liver
30 chr1:172400800-172410800 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr1:172401000-172409600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:172401200-172402800 Enhancers Primary T helper naive cells fromperipheralblood blood
33 chr1:172401200-172410000 Weak transcription Thymus Thymus
34 chr1:172401200-172410400 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr1:172401200-172411000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:172401200-172411000 Weak transcription Right Atrium heart
37 chr1:172401200-172412400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:172401400-172402200 Enhancers Primary T cells from cord blood blood
39 chr1:172401400-172409600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr1:172401400-172409600 Weak transcription NHEK skin
41 chr1:172401400-172410000 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:172401400-172410600 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr1:172401400-172410800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:172401400-172411000 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr1:172401400-172411000 Weak transcription HMEC breast
46 chr1:172401400-172411800 Weak transcription Fetal Intestine Small intestine
47 chr1:172401400-172412000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr1:172401400-172412000 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr1:172401400-172412200 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr1:172401400-172412800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015