Variant report

Variant	rs60302909
Chromosome Location	chr1:172412845-172412846
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:113)
CpG islands
(count:61)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:113 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr1:172412764-172413478	GM12878	blood:	n/a	n/a
2	TBP	chr1:172412775-172413594	K562	blood:	n/a	n/a
3	SMC3	chr1:172412739-172413529	Hela-S3	cervix:	n/a	chr1:172413288-172413302 chr1:172413291-172413301
4	HCFC1	chr1:172412756-172413505	K562	blood:	n/a	n/a
5	POLR2A	chr1:172412769-172413529	SK-N-MC	brain:	n/a	n/a
6	MAZ	chr1:172412671-172413555	K562	blood:	n/a	n/a
7	GABPA	chr1:172412765-172413643	SK-N-SH	brain:	n/a	n/a
8	MTA3	chr1:172412633-172413492	GM12878	blood:	n/a	n/a
9	RCOR1	chr1:172412628-172413690	K562	blood:	n/a	n/a
10	CTCF	chr1:172412800-172412950	HBMEC	blood vessel:	n/a	n/a
11	YY1	chr1:172412782-172413570	A549	lung:	n/a	chr1:172413473-172413483
12	POLR2A	chr1:172412819-172413481	GM12878	blood:	n/a	n/a
13	ELK4	chr1:172412839-172413461	Hela-S3	cervix:	n/a	chr1:172413215-172413226
14	TCF12	chr1:172412713-172413615	A549	lung:	n/a	n/a
15	MAX	chr1:172412831-172413517	SK-N-SH	brain:	n/a	n/a
16	ZBTB7A	chr1:172412745-172413338	ECC-1	luminal epithelium:	n/a	n/a
17	MAX	chr1:172412664-172413609	A549	lung:	n/a	n/a
18	ELF1	chr1:172412696-172413725	HCT-116	colon:	n/a	n/a
19	HA-E2F1	chr1:172412831-172413381	Hela-S3	cervix:	n/a	chr1:172413176-172413187
20	POLR2A	chr1:172412787-172413464	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr1:172412808-172413487	GM12892	blood:	n/a	n/a
22	ELF1	chr1:172412708-172413541	GM12878	blood:	n/a	n/a
23	UBTF	chr1:172412763-172413418	K562	blood:	n/a	n/a
24	SP1	chr1:172412689-172413575	A549	lung:	n/a	chr1:172413445-172413459
25	POLR2A	chr1:172412686-172413671	GM19099	blood:	n/a	n/a
26	SIN3AK20	chr1:172412812-172413470	PANC-1	pancreas:	n/a	n/a
27	STAT1	chr1:172412817-172413492	GM12878	blood:	n/a	n/a
28	ELF1	chr1:172412762-172413548	K562	blood:	n/a	n/a
29	ELF1	chr1:172412764-172413606	SK-N-SH	brain:	n/a	n/a
30	ZBTB7A	chr1:172412763-172413396	K562	blood:	n/a	n/a
31	POLR2A	chr1:172412738-172413356	K562	blood:	n/a	n/a
32	POLR2A	chr1:172412046-172413557	MCF10A-Er-Src	breast:	n/a	n/a
33	POLR2A	chr1:172412845-172413457	PANC-1	pancreas:	n/a	n/a
34	POLR2A	chr1:172412684-172413494	GM19193	blood:	n/a	n/a
35	ETS1	chr1:172412787-172413403	K562	blood:	n/a	n/a
36	CTCF	chr1:172412280-172413895	A549	lung:	n/a	chr1:172413281-172413302 chr1:172413288-172413301 chr1:172413286-172413304
37	GABPA	chr1:172412781-172413609	HL-60	blood:	n/a	n/a
38	POLR2A	chr1:172412762-172413523	HepG2	liver:	n/a	n/a
39	POLR2A	chr1:172412207-172413432	Hela-S3	cervix:	n/a	n/a
40	E2F6	chr1:172412810-172413346	K562	blood:	n/a	chr1:172413175-172413186
41	ELF1	chr1:172412772-172413549	A549	lung:	n/a	n/a
42	POLR2A	chr1:172412843-172413426	ProgFib	skin:	n/a	n/a
43	TEAD4	chr1:172412573-172413495	K562	blood:	n/a	n/a
44	RAD21	chr1:172412839-172414010	SK-N-SH	brain:	n/a	chr1:172413287-172413300 chr1:172413284-172413303
45	POLR2A	chr1:172412795-172413504	Hela-S3	cervix:	n/a	n/a
46	SMARCB1	chr1:172412693-172413529	Hela-S3	cervix:	n/a	n/a
47	SMARCC1	chr1:172412274-172413626	Hela-S3	cervix:	n/a	n/a
48	SMC3	chr1:172412544-172413882	SK-N-SH	brain:	n/a	chr1:172413288-172413302 chr1:172413291-172413301
49	ELF1	chr1:172412733-172413525	GM12878	blood:	n/a	n/a
50	ELF1	chr1:172412685-172413713	HCT-116	colon:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:172412837-172412887	Jurkat	blood:	n/a
2	chr1:172412837-172412887	AG04449	skin:	fetal
3	chr1:172412837-172412887	Caco-2	colon:	n/a
4	chr1:172412837-172412887	ECC-1	luminal epithelium:	n/a
5	chr1:172412837-172412887	HNPCEpiC	eye:	n/a
6	chr1:172412837-172412887	SK-N-MC	brain:	n/a
7	chr1:172412837-172412887	NHBE	bronchial:	n/a
8	chr1:172412837-172412887	HPAEpiC	pulmonary alveolar:	n/a
9	chr1:172412837-172412887	HCF	heart:	n/a
10	chr1:172412837-172412887	SKMC	muscle:	n/a
11	chr1:172412837-172412887	PANC-1	pancreas:	n/a
12	chr1:172412837-172412887	AG09319	gingival:	n/a
13	chr1:172412837-172412887	GM12878	blood:	n/a
14	chr1:172412837-172412887	HAEpiC	amniotic membrane:	n/a
15	chr1:172412837-172412887	HRCEpiC	kidney:	n/a
16	chr1:172412837-172412887	HCPEpiC	choroid plexus:	n/a
17	chr1:172412837-172412887	LNCaP	prostate:	n/a
18	chr1:172412837-172412887	NT2-D1	testis:	n/a
19	chr1:172412837-172412887	CMK	blood:	n/a
20	chr1:172412837-172412887	K562	blood:	n/a
21	chr1:172412837-172412887	BJ	skin:	n/a
22	chr1:172412837-172412887	GM12891	blood:	n/a
23	chr1:172412837-172412887	AoSMC	blood vessel:	n/a
24	chr1:172412837-172412887	NHDF-neo	bronchial:	n/a
25	chr1:172412837-172412887	Hela-S3	cervix:	n/a
26	chr1:172412837-172412887	AG10803	skin:	n/a
27	chr1:172412837-172412887	GM12892	blood:	n/a
28	chr1:172412837-172412887	GM06990	blood:	n/a
29	chr1:172412837-172412887	PFSK-1	brain:	n/a
30	chr1:172412837-172412887	A549	lung:	n/a
31	chr1:172412837-172412887	AG09309	skin:	n/a
32	chr1:172412837-172412887	HUVEC	blood vessel:	n/a
33	chr1:172412837-172412887	NH-A	brain:	n/a
34	chr1:172412837-172412887	HEK293	kidney:	embryo
35	chr1:172412837-172412887	PrEC	prostate:	n/a
36	chr1:172412837-172412887	T-47D	breast:	n/a
37	chr1:172412837-172412887	U87	brain:	n/a
38	chr1:172412837-172412887	HepG2	liver:	n/a
39	chr1:172412837-172412887	SAEC	small airway:	n/a
40	chr1:172412837-172412887	Hepatocyte	liver:	n/a
41	chr1:172412837-172412887	HRPEpiC	eye:	n/a
42	chr1:172412837-172412887	HCM	heart:	n/a
43	chr1:172412837-172412887	HRE	kidney:	n/a
44	chr1:172412837-172412887	HCT-116	colon:	n/a
45	chr1:172412837-172412887	SK-N-SH_RA	brain:	n/a
46	chr1:172412837-172412887	GM19239	blood:	n/a
47	chr1:172412837-172412887	AG04450	lung:	fetal
48	chr1:172412837-172412887	ovcar-3	ovarian:	n/a
49	chr1:172412837-172412887	MCF10A-Er-Src	breast:	n/a
50	chr1:172412837-172412887	HIPEpiC	eye:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172410326..172414934-chr1:172499314..172504781,7	K562	blood:
2	chr1:172411739..172413283-chr17:73499365..73502360,2	MCF-7	breast:
3	chr1:172412591..172413210-chr16:18812362..18813314,2	Hela-S3	cervix:
4	chr1:172411064..172415256-chr1:172501216..172504781,6	K562	blood:
5	chr1:172411084..172422561-chr1:172496524..172504623,44	MCF-7	breast:
6	chr1:172412703..172413401-chr15:76135877..76136831,2	Hela-S3	cervix:
7	chr1:172412087..172424934-chr1:172497120..172505334,59	MCF-7	breast:

No data

Variant related genes	Relation type
C1orf105	TF binding region
C1orf105	CpG island
ENSG00000094975	Chromatin interaction
ENSG00000177303	Chromatin interaction
ENSG00000260342	Chromatin interaction
ENSG00000140367	Chromatin interaction
ENSG00000170540	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1063412	0.97[ASN][1000 genomes]
rs10752957	0.82[ASN][1000 genomes]
rs11484605	0.82[ASN][1000 genomes]
rs13932	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157450	0.83[EUR][1000 genomes]
rs2213740	0.84[EUR][1000 genomes]
rs2269613	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269614	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269615	0.94[ASN][1000 genomes]
rs2269616	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285170	0.89[ASN][1000 genomes]
rs2285171	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285172	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285173	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285174	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285175	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285176	0.92[ASN][1000 genomes]
rs2301455	0.92[ASN][1000 genomes]
rs2422141	0.82[ASN][1000 genomes]
rs3213563	0.97[ASN][1000 genomes]
rs3937046	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4916186	0.81[ASN][1000 genomes]
rs4916258	0.97[ASN][1000 genomes]
rs6424923	0.92[ASN][1000 genomes]
rs6658843	0.82[ASN][1000 genomes]
rs6669286	0.83[EUR][1000 genomes]
rs6673869	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6674073	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6680035	0.83[EUR][1000 genomes]
rs6689377	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6690191	0.83[EUR][1000 genomes]
rs6702667	0.82[ASN][1000 genomes]
rs7411767	0.82[ASN][1000 genomes]
rs7550016	0.82[EUR][1000 genomes]
rs929098	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9425311	0.80[ASN][1000 genomes]
rs9425313	0.85[EUR][1000 genomes]
rs9425316	0.82[ASN][1000 genomes]
rs9425604	0.81[EUR][1000 genomes]
rs9425606	0.81[ASN][1000 genomes]
rs9425619	0.83[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172411800-172413000	Flanking Active TSS	Primary T cells from cord blood	blood
2	chr1:172411800-172413400	Active TSS	NHLF	lung
3	chr1:172411800-172413600	Active TSS	GM12878-XiMat	blood
4	chr1:172412000-172413400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr1:172412000-172413400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:172412000-172413400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:172412000-172413400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr1:172412000-172413400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr1:172412000-172413400	Active TSS	Stomach Smooth Muscle	stomach
10	chr1:172412000-172413600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:172412000-172413600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:172412000-172413600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr1:172412200-172413400	Active TSS	Left Ventricle	heart
14	chr1:172412200-172413400	Active TSS	Psoas Muscle	Psoas
15	chr1:172412200-172413400	Active TSS	Right Atrium	heart
16	chr1:172412200-172413400	Active TSS	Right Ventricle	heart
17	chr1:172412400-172413200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr1:172412400-172413200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:172412400-172413200	Active TSS	Brain Anterior Caudate	brain
20	chr1:172412400-172413200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr1:172412400-172413200	Active TSS	Fetal Muscle Leg	muscle
22	chr1:172412400-172413200	Active TSS	Placenta	Placenta
23	chr1:172412400-172413200	Active TSS	Fetal Thymus	thymus
24	chr1:172412400-172413200	Active TSS	Placenta Amnion	Placenta Amnion
25	chr1:172412400-172413200	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr1:172412400-172413400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr1:172412400-172413400	Active TSS	H9 Cell Line	embryonic stem cell
28	chr1:172412400-172413400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:172412400-172413400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:172412400-172413400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:172412400-172413400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:172412400-172413400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:172412400-172413400	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr1:172412400-172413400	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr1:172412400-172413400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr1:172412400-172413400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:172412400-172413400	Active TSS	Muscle Satellite Cultured Cells	--
38	chr1:172412400-172413400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr1:172412400-172413400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:172412400-172413400	Active TSS	Colonic Mucosa	Colon
41	chr1:172412400-172413400	Active TSS	Fetal Brain Male	brain
42	chr1:172412400-172413400	Active TSS	Fetal Intestine Small	intestine
43	chr1:172412400-172413400	Active TSS	Fetal Lung	lung
44	chr1:172412400-172413400	Active TSS	Fetal Stomach	stomach
45	chr1:172412400-172413400	Active TSS	Rectal Smooth Muscle	rectum
46	chr1:172412400-172413400	Active TSS	Thymus	Thymus
47	chr1:172412400-172413400	Active TSS	Hela-S3	cervix
48	chr1:172412400-172413400	Active TSS	NH-A	brain
49	chr1:172412400-172413400	Active TSS	NHDF-Ad	bronchial
50	chr1:172412400-172413400	Active TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links