Variant report

Variant	rs9425619
Chromosome Location	chr1:172428769-172428770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172424018..172425586-chr1:172428604..172431117,2	MCF-7	breast:
2	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
3	chr1:172427186..172429187-chr1:172494410..172497068,2	K562	blood:
4	chr1:172427216..172431593-chr1:172433461..172437861,5	MCF-7	breast:
5	chr1:172424634..172428782-chr1:172501344..172503706,6	K562	blood:
6	chr1:172426679..172428842-chr1:172434307..172436008,2	K562	blood:
7	chr1:172428539..172433124-chr1:172502239..172505220,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13932	0.82[EUR][1000 genomes]
rs1894634	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097500	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213740	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269613	0.86[EUR][1000 genomes]
rs2269614	0.86[EUR][1000 genomes]
rs2285171	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2285172	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2285173	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2285174	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2285175	0.86[EUR][1000 genomes]
rs2901656	1.00[ASN][1000 genomes]
rs3937046	0.83[EUR][1000 genomes]
rs60302909	0.83[EUR][1000 genomes]
rs60821093	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6669286	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673869	0.86[EUR][1000 genomes]
rs6674073	0.86[EUR][1000 genomes]
rs6680035	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689377	0.86[EUR][1000 genomes]
rs6690191	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691993	1.00[ASN][1000 genomes]
rs6699095	1.00[ASN][1000 genomes]
rs7550016	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286858	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929098	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9425329	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425334	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425629	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423200-172429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:172423200-172429200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
5	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
8	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:172427000-172429200	Weak transcription	HepG2	liver
10	chr1:172427200-172429400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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