Variant report

Variant	rs9286858
Chromosome Location	chr1:172443197-172443198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172441688..172443816-chr1:172500587..172502900,2	K562	blood:
2	chr1:172440495..172444630-chr1:172497465..172500697,4	MCF-7	breast:
3	chr1:172417311..172418961-chr1:172442502..172444312,2	MCF-7	breast:
4	chr1:172435653..172437888-chr1:172440470..172444240,3	MCF-7	breast:
5	chr1:172439490..172443248-chr1:172495023..172498932,4	MCF-7	breast:
6	chr1:172424806..172427327-chr1:172442354..172444546,2	K562	blood:
7	chr1:172442195..172443795-chr1:172449989..172451528,2	MCF-7	breast:
8	chr1:172440631..172443212-chr1:172501569..172503673,3	MCF-7	breast:
9	chr1:172442117..172444152-chr1:172447245..172449151,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1063412	0.81[CHB][hapmap]
rs13932	0.94[CEU][hapmap]
rs1894634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097500	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2213740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2269613	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs2269614	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2269616	0.94[CEU][hapmap]
rs2285170	0.82[CHB][hapmap]
rs2285171	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2285172	0.82[EUR][1000 genomes]
rs2285173	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2285174	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2285175	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2285176	0.82[CHB][hapmap]
rs2301455	0.82[CHB][hapmap]
rs2901656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3937046	0.94[CEU][hapmap]
rs60821093	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6424923	0.82[CHB][hapmap]
rs6669286	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673869	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs6674073	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs6680035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689377	0.82[EUR][1000 genomes]
rs6690191	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691993	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6692458	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs6695139	0.89[CEU][hapmap]
rs6699095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73048551	0.89[AFR][1000 genomes]
rs7550016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929098	0.82[EUR][1000 genomes]
rs9425329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425600	0.94[CEU][hapmap]
rs9425619	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425629	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172436800-172444200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:172437000-172444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172437800-172445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:172438200-172449200	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:172439000-172444400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:172439800-172443400	Enhancers	HepG2	liver
7	chr1:172440000-172445400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:172440200-172445200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:172440800-172444200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:172441400-172443200	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:172441400-172443400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:172441400-172443400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:172441800-172443400	Enhancers	Ovary	ovary
14	chr1:172442000-172443400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:172442000-172444400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:172442200-172443200	Enhancers	Primary B cells from cord blood	blood
17	chr1:172442200-172443200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172442200-172443200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr1:172442400-172443800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:172442600-172443200	Enhancers	Placenta	Placenta
21	chr1:172442600-172443400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:172442800-172443400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:172442800-172443400	Enhancers	Stomach Mucosa	stomach
24	chr1:172442800-172443600	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr1:172442800-172445200	Enhancers	NHEK	skin
26	chr1:172443000-172444200	Weak transcription	HMEC	breast
27	chr1:172443000-172445000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr1:172443000-172445400	Weak transcription	Gastric	stomach
29	chr1:172443000-172445400	Weak transcription	Pancreas	Pancrea
30	chr1:172443000-172448400	Weak transcription	K562	blood

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