Variant report

Variant	rs2901656
Chromosome Location	chr1:172434812-172434813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172426679..172428842-chr1:172434307..172436008,2	K562	blood:
2	chr1:172424577..172428179-chr1:172432936..172436008,3	K562	blood:
3	chr1:172427216..172431593-chr1:172433461..172437861,5	MCF-7	breast:
4	chr1:172432677..172435366-chr1:172500989..172504354,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1063412	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[MEX][hapmap]
rs12134818	0.87[YRI][hapmap]
rs1894634	0.97[ASN][1000 genomes]
rs2097500	0.97[ASN][1000 genomes]
rs2157450	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2213740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2269613	0.85[CHB][hapmap]
rs2269614	0.81[CHB][hapmap]
rs2269615	0.81[CHD][hapmap];0.82[MEX][hapmap]
rs2285170	0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs2285171	0.81[CHB][hapmap]
rs2285173	0.81[CHB][hapmap]
rs2285174	0.81[CHB][hapmap]
rs2285175	0.81[CHB][hapmap]
rs2285176	0.96[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs2301455	0.81[CHB][hapmap]
rs60821093	0.93[ASN][1000 genomes]
rs6424923	0.81[CHB][hapmap]
rs6669286	1.00[ASN][1000 genomes]
rs6673869	0.81[CHB][hapmap]
rs6674073	0.81[CHB][hapmap]
rs6680035	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6690191	1.00[ASN][1000 genomes]
rs6691993	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516301	0.96[CEU][hapmap];0.80[CHB][hapmap]
rs7550016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9286858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425311	0.96[CEU][hapmap]
rs9425329	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9425334	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425619	1.00[ASN][1000 genomes]
rs9425629	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2901656	C1orf105	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:172430200-172435400	Weak transcription	HepG2	liver
5	chr1:172430400-172435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172430400-172435400	Weak transcription	HMEC	breast
7	chr1:172430600-172435200	Weak transcription	NHEK	skin
8	chr1:172430600-172436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:172431200-172435000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:172431200-172435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:172431600-172435400	Weak transcription	A549	lung
12	chr1:172434600-172435000	Enhancers	Left Ventricle	heart
13	chr1:172434600-172435000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:172434600-172435400	Flanking Active TSS	Fetal Heart	heart
15	chr1:172434600-172435800	Enhancers	K562	blood
16	chr1:172434600-172436400	Enhancers	Fetal Muscle Leg	muscle
17	chr1:172434600-172436800	Enhancers	Pancreas	Pancrea
18	chr1:172434600-172437000	Enhancers	HSMMtube	muscle
19	chr1:172434800-172435000	Enhancers	Psoas Muscle	Psoas
20	chr1:172434800-172435800	Enhancers	Skeletal Muscle Female	skeletal muscle

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