Variant report

Variant	rs2213740
Chromosome Location	chr1:172427351-172427352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
2	chr1:172424577..172428179-chr1:172432936..172436008,3	K562	blood:
3	chr1:172427186..172429187-chr1:172494410..172497068,2	K562	blood:
4	chr1:172425636..172427358-chr1:172429662..172431249,2	MCF-7	breast:
5	chr1:172425095..172427672-chr1:172501670..172503756,3	MCF-7	breast:
6	chr1:172427216..172431593-chr1:172433461..172437861,5	MCF-7	breast:
7	chr1:172424634..172428782-chr1:172501344..172503706,6	K562	blood:
8	chr1:172426679..172428842-chr1:172434307..172436008,2	K562	blood:
9	chr1:172418680..172423994-chr1:172424179..172427425,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1063412	0.81[CHB][hapmap]
rs13932	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs1894634	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097500	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269613	0.95[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs2269614	0.95[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2269616	0.94[CEU][hapmap]
rs2285170	0.82[CHB][hapmap]
rs2285171	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2285172	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2285173	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2285174	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2285175	0.95[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs2285176	0.82[CHB][hapmap]
rs2301455	0.82[CHB][hapmap]
rs2901656	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3937046	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs60302909	0.84[EUR][1000 genomes]
rs60821093	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6424923	0.82[CHB][hapmap]
rs6669286	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673869	0.94[CEU][hapmap];0.81[CHB][hapmap];0.87[EUR][1000 genomes]
rs6674073	0.95[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs6680035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689377	0.87[EUR][1000 genomes]
rs6690191	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691993	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6692458	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs6695139	0.89[CEU][hapmap]
rs6699095	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7550016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929098	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9425329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425600	0.94[CEU][hapmap]
rs9425619	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425629	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423200-172429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:172423200-172429200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
5	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
8	chr1:172426400-172428200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:172427000-172429200	Weak transcription	HepG2	liver
11	chr1:172427200-172429400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links