Variant report

Variant	rs7550016
Chromosome Location	chr1:172432981-172432982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172424577..172428179-chr1:172432936..172436008,3	K562	blood:
2	chr1:172428539..172433124-chr1:172502239..172505220,5	MCF-7	breast:
3	chr1:172432677..172435366-chr1:172500989..172504354,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1063412	0.84[CHB][hapmap]
rs13932	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1894634	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097500	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2213740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269613	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2269614	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2269616	1.00[CEU][hapmap]
rs2285170	0.84[CHB][hapmap]
rs2285171	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2285172	0.85[EUR][1000 genomes]
rs2285173	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2285174	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2285175	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs2285176	0.84[CHB][hapmap]
rs2301455	0.84[CHB][hapmap]
rs2901656	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3937046	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs60302909	0.82[EUR][1000 genomes]
rs60821093	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6424923	0.84[CHB][hapmap]
rs6669286	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673869	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs6674073	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs6680035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689377	0.85[EUR][1000 genomes]
rs6690191	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691993	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6692458	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs6695139	0.87[CEU][hapmap]
rs6699095	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9286858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929098	0.85[EUR][1000 genomes]
rs9425329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425600	1.00[CEU][hapmap]
rs9425619	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425629	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
3	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:172430200-172435400	Weak transcription	HepG2	liver
7	chr1:172430400-172435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172430400-172435400	Weak transcription	HMEC	breast
9	chr1:172430600-172435200	Weak transcription	NHEK	skin
10	chr1:172430600-172436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:172431200-172435000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:172431200-172435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:172431600-172435400	Weak transcription	A549	lung

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