Variant report

Variant	rs1894634
Chromosome Location	chr1:172440199-172440200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172423456..172425141-chr1:172439304..172441807,2	MCF-7	breast:
2	chr1:172439490..172443248-chr1:172495023..172498932,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13932	0.93[CEU][hapmap]
rs2097500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157450	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2213740	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2269613	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2269614	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2269616	0.93[CEU][hapmap]
rs2285171	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2285172	0.82[EUR][1000 genomes]
rs2285173	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2285174	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2285175	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2901656	0.97[ASN][1000 genomes]
rs3937046	0.93[CEU][hapmap]
rs60821093	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6669286	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673869	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6674073	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6680035	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6689377	0.82[EUR][1000 genomes]
rs6690191	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6691993	0.97[ASN][1000 genomes]
rs6692458	0.88[CEU][hapmap]
rs6695139	0.87[CEU][hapmap]
rs6699095	0.97[ASN][1000 genomes]
rs73048551	0.91[AFR][1000 genomes]
rs7550016	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9286858	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929098	0.82[EUR][1000 genomes]
rs9425329	1.00[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425334	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425600	0.93[CEU][hapmap]
rs9425619	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425629	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172435800-172441800	Weak transcription	K562	blood
2	chr1:172436400-172440200	Weak transcription	Right Atrium	heart
3	chr1:172436800-172444200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172437000-172440800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:172437000-172441200	Weak transcription	NHEK	skin
6	chr1:172437000-172441600	Weak transcription	HMEC	breast
7	chr1:172437000-172444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172437800-172445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:172438200-172449200	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:172439000-172441000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:172439000-172444400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:172439200-172440400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:172439200-172442600	Weak transcription	Placenta	Placenta
14	chr1:172439600-172440800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:172439600-172442800	Weak transcription	Stomach Mucosa	stomach
16	chr1:172439800-172440800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:172439800-172441000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:172439800-172442600	Weak transcription	Pancreas	Pancrea
19	chr1:172439800-172443400	Enhancers	HepG2	liver
20	chr1:172440000-172440200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:172440000-172440400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:172440000-172445400	Weak transcription	Fetal Intestine Small	intestine

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