Variant report

Variant	rs60821093
Chromosome Location	chr1:172450624-172450625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444678..172448407-chr1:172449595..172452783,4	MCF-7	breast:
2	chr1:172448573..172451341-chr1:172458163..172460914,3	K562	blood:
3	chr1:172448419..172451395-chr1:172454966..172457854,2	MCF-7	breast:
4	chr1:172444366..172446246-chr1:172448282..172450692,2	K562	blood:
5	chr1:172442195..172443795-chr1:172449989..172451528,2	MCF-7	breast:
6	chr1:172443532..172455037-chr1:172498094..172506505,15	MCF-7	breast:
7	chr1:172448573..172451341-chr1:172458163..172460914,2	K562	blood:
8	chr1:172448493..172450937-chr1:172451011..172455135,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1894634	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2097500	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157450	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2213740	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2269613	0.80[EUR][1000 genomes]
rs2269614	0.80[EUR][1000 genomes]
rs2285171	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2285172	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2285173	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2285174	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2285175	0.80[EUR][1000 genomes]
rs2901656	0.93[ASN][1000 genomes]
rs6669286	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6673869	0.80[EUR][1000 genomes]
rs6674073	0.80[EUR][1000 genomes]
rs6680035	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6689377	0.80[EUR][1000 genomes]
rs6690191	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6691993	0.93[ASN][1000 genomes]
rs6699095	0.93[ASN][1000 genomes]
rs7550016	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9286858	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929098	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9425329	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9425334	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9425619	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9425629	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172444200-172456200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:172445000-172452400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:172445800-172450800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:172445800-172451000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:172445800-172451600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:172446800-172451000	Weak transcription	A549	lung
7	chr1:172447600-172452800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:172448200-172452600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172448200-172452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:172448400-172452800	Weak transcription	HMEC	breast
11	chr1:172448600-172453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172448600-172453200	Weak transcription	NHEK	skin
13	chr1:172449800-172450800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:172449800-172451600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:172449800-172453000	Weak transcription	Placenta	Placenta
16	chr1:172450000-172452800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:172450200-172456200	Weak transcription	Primary T cells from cord blood	blood
18	chr1:172450400-172450800	Weak transcription	HepG2	liver

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