Variant report

Variant	rs6699095
Chromosome Location	chr1:172429245-172429246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172424018..172425586-chr1:172428604..172431117,2	MCF-7	breast:
2	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
3	chr1:172422534..172424842-chr1:172429005..172432418,3	K562	blood:
4	chr1:172419668..172422031-chr1:172429212..172431739,2	K562	blood:
5	chr1:172427216..172431593-chr1:172433461..172437861,5	MCF-7	breast:
6	chr1:172428539..172433124-chr1:172502239..172505220,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1063412	0.81[CHB][hapmap]
rs12134818	0.91[YRI][hapmap]
rs1894634	0.97[ASN][1000 genomes]
rs2097500	0.97[ASN][1000 genomes]
rs2157450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2213740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2269613	0.85[CHB][hapmap]
rs2269614	0.82[CHB][hapmap]
rs2285170	0.92[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs2285171	0.81[CHB][hapmap]
rs2285173	0.81[CHB][hapmap]
rs2285174	0.81[CHB][hapmap]
rs2285175	0.82[CHB][hapmap]
rs2285176	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs2301455	0.82[CHB][hapmap]
rs2901656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821093	0.93[ASN][1000 genomes]
rs6424923	0.82[CHB][hapmap]
rs6669286	1.00[ASN][1000 genomes]
rs6673869	0.81[CHB][hapmap]
rs6674073	0.82[CHB][hapmap]
rs6680035	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6690191	1.00[ASN][1000 genomes]
rs6691993	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692458	0.81[JPT][hapmap]
rs7516301	0.92[CEU][hapmap]
rs7550016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9286858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425311	0.96[CEU][hapmap]
rs9425329	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9425334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425619	1.00[ASN][1000 genomes]
rs9425629	0.90[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
3	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
6	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:172427200-172429400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:172428800-172430400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:172428800-172430400	Enhancers	HMEC	breast
10	chr1:172429000-172430200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:172429000-172430400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:172429000-172430600	Enhancers	NHEK	skin
13	chr1:172429200-172430200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr1:172429200-172430200	Enhancers	HepG2	liver

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