Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172426591..172429561-chr1:172505407..172507168,2	K562	blood:
2	chr1:172420977..172423750-chr1:172424535..172427045,4	MCF-7	breast:
3	chr1:172424577..172428179-chr1:172432936..172436008,3	K562	blood:
4	chr1:172425636..172427358-chr1:172429662..172431249,2	MCF-7	breast:
5	chr1:172425095..172427672-chr1:172501670..172503756,3	MCF-7	breast:
6	chr1:172424806..172427327-chr1:172442354..172444546,2	K562	blood:
7	chr1:172424634..172428782-chr1:172501344..172503706,6	K562	blood:
8	chr1:172426679..172428842-chr1:172434307..172436008,2	K562	blood:
9	chr1:172424634..172427242-chr1:172501773..172503661,2	K562	blood:
10	chr1:172418680..172423994-chr1:172424179..172427425,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction
ENSG00000180999	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1894634	0.97[ASN][1000 genomes]
rs2097500	0.97[ASN][1000 genomes]
rs2157450	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2213740	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2285170	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2285176	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs2901656	0.82[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60821093	0.93[ASN][1000 genomes]
rs6669286	1.00[ASN][1000 genomes]
rs6680035	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6690191	1.00[ASN][1000 genomes]
rs6699095	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516301	0.92[CEU][hapmap]
rs7550016	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9286858	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425311	0.92[CEU][hapmap]
rs9425329	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9425334	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9425619	1.00[ASN][1000 genomes]
rs9425629	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6691993	C1orf105	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172422600-172435400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172423200-172429000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:172423200-172429200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:172423400-172434600	Weak transcription	HSMMtube	muscle
5	chr1:172423600-172432000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:172425800-172435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:172426000-172436000	Weak transcription	Fetal Intestine Large	intestine
8	chr1:172426400-172427200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:172426400-172427200	Enhancers	K562	blood
10	chr1:172426400-172428200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:172426400-172434600	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:172426600-172427000	Enhancers	Adipose Nuclei	Adipose
13	chr1:172426600-172427000	Enhancers	HepG2	liver
14	chr1:172426800-172427200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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