Variant report

Variant	rs3937046
Chromosome Location	chr1:172415546-172415547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172411084..172422561-chr1:172496524..172504623,44	MCF-7	breast:
2	chr1:172412087..172424934-chr1:172497120..172505334,59	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1063412	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10752946	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs10752957	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10798005	1.00[CHB][hapmap];0.84[CHD][hapmap];0.80[ASN][1000 genomes]
rs11484605	0.84[ASN][1000 genomes]
rs13932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2157450	0.94[CEU][hapmap];0.81[CHD][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs2213740	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2269613	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2269614	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2269615	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2269616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2285170	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2285171	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285172	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285173	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285174	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285175	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2285176	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2301455	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2422141	0.84[ASN][1000 genomes]
rs3213563	0.95[ASN][1000 genomes]
rs4916186	0.82[ASN][1000 genomes]
rs4916258	0.95[ASN][1000 genomes]
rs60302909	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6424923	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6658843	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6669286	0.83[EUR][1000 genomes]
rs6673869	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6674073	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6680035	0.94[CEU][hapmap];0.81[CHD][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs6689377	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6690191	0.83[EUR][1000 genomes]
rs6692458	0.83[CEU][hapmap]
rs6695139	0.83[CEU][hapmap]
rs6702667	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs7411767	0.84[ASN][1000 genomes]
rs7516301	1.00[CHB][hapmap]
rs7550016	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9286858	0.94[CEU][hapmap]
rs929098	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9425308	0.95[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs9425311	1.00[CHB][hapmap];0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs9425313	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425316	0.83[ASN][1000 genomes]
rs9425329	0.94[CEU][hapmap];0.81[CHD][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap]
rs9425334	0.94[CEU][hapmap];0.81[CHD][hapmap];0.93[MEX][hapmap];0.80[TSI][hapmap]
rs9425598	1.00[CHB][hapmap]
rs9425600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs9425601	0.80[ASN][1000 genomes]
rs9425602	0.81[ASN][1000 genomes]
rs9425604	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9425606	1.00[CHB][hapmap];0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs9425619	0.83[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172413600-172416400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172413600-172416400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:172413600-172416400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:172413600-172416400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:172413600-172416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:172413600-172416600	Weak transcription	Stomach Mucosa	stomach
9	chr1:172413600-172417200	Weak transcription	NHEK	skin
10	chr1:172413600-172417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:172413600-172417800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:172413600-172417800	Weak transcription	Placenta	Placenta
13	chr1:172413600-172418000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:172413600-172418000	Weak transcription	HSMMtube	muscle
15	chr1:172413600-172418000	Weak transcription	NH-A	brain
16	chr1:172413600-172418400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:172413600-172418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:172413600-172418600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:172413600-172418600	Weak transcription	Esophagus	oesophagus
20	chr1:172413600-172418800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:172413600-172418800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:172413600-172418800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:172413600-172418800	Weak transcription	Lung	lung
24	chr1:172413600-172418800	Weak transcription	Small Intestine	intestine
25	chr1:172413600-172419000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:172413600-172419000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:172413600-172419000	Weak transcription	Fetal Thymus	thymus
28	chr1:172413600-172419000	Weak transcription	Right Ventricle	heart
29	chr1:172413600-172419200	Weak transcription	Fetal Heart	heart
30	chr1:172413600-172421800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:172413600-172421800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:172413800-172416200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:172413800-172416200	Weak transcription	Fetal Intestine Large	intestine
34	chr1:172413800-172416200	Weak transcription	Hela-S3	cervix
35	chr1:172413800-172416400	Weak transcription	HMEC	breast
36	chr1:172413800-172416800	Weak transcription	Adipose Nuclei	Adipose
37	chr1:172413800-172417200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr1:172413800-172417800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr1:172413800-172417800	Weak transcription	Fetal Kidney	kidney
40	chr1:172413800-172418200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:172413800-172418200	Weak transcription	K562	blood
42	chr1:172413800-172418800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:172413800-172418800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr1:172413800-172418800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:172413800-172418800	Weak transcription	GM12878-XiMat	blood
46	chr1:172413800-172419000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr1:172413800-172419000	Weak transcription	Primary T cells from cord blood	blood
48	chr1:172413800-172419000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr1:172413800-172419000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:172413800-172419000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links