The 2.0 version of rSNPBase

Variant report

Variant rs9425316
Chromosome Location chr1:172400860-172400861
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172373000-172411800 Weak transcription Brain Angular Gyrus brain
2 chr1:172385800-172411000 Weak transcription Fetal Stomach stomach
3 chr1:172391000-172410600 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:172391000-172412200 Weak transcription HSMMtube muscle
5 chr1:172391400-172409400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:172391800-172411000 Weak transcription Spleen Spleen
7 chr1:172392000-172412200 Weak transcription Right Ventricle heart
8 chr1:172392200-172411000 Weak transcription Left Ventricle heart
9 chr1:172392400-172401000 Weak transcription Lung lung
10 chr1:172395600-172412200 Weak transcription HUES64 Cell Line embryonic stem cell
11 chr1:172395800-172401000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:172395800-172402800 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr1:172396200-172412000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr1:172396400-172402800 Enhancers Primary T helper cells fromperipheralblood blood
15 chr1:172396600-172402200 Enhancers Primary T killer memory cells from peripheral blood blood
16 chr1:172396600-172411000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:172396600-172412400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:172396800-172401000 Weak transcription Primary B cells from peripheral blood blood
19 chr1:172396800-172411600 Weak transcription Primary hematopoietic stem cells blood
20 chr1:172396800-172412200 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr1:172397000-172402600 Weak transcription GM12878-XiMat blood
22 chr1:172397000-172410000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:172397000-172411000 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:172397200-172401000 Weak transcription Right Atrium heart
25 chr1:172397200-172402200 Enhancers Primary T helper cells PMA-I stimulated --
26 chr1:172397800-172401000 Weak transcription Fetal Intestine Small intestine
27 chr1:172398800-172401600 Enhancers Fetal Thymus thymus
28 chr1:172398800-172402200 Enhancers Primary T cells fromperipheralblood blood
29 chr1:172398800-172411000 Weak transcription Aorta Aorta
30 chr1:172399000-172407600 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr1:172399000-172411600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:172399200-172410800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:172399400-172407000 Weak transcription Fetal Brain Female brain
34 chr1:172399600-172401000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:172399800-172401200 Enhancers Thymus Thymus
36 chr1:172399800-172401400 Enhancers Primary T regulatory cells fromperipheralblood blood
37 chr1:172399800-172402200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
38 chr1:172400000-172401600 Enhancers Placenta Amnion Placenta Amnion
39 chr1:172400000-172401600 Enhancers Stomach Mucosa stomach
40 chr1:172400200-172401400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:172400200-172401600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:172400200-172402000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
43 chr1:172400400-172401200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
44 chr1:172400400-172401400 Flanking Active TSS Primary T cells from cord blood blood
45 chr1:172400400-172401400 Enhancers HMEC breast
46 chr1:172400400-172401600 Enhancers Breast Myoepithelial Primary Cells Breast
47 chr1:172400600-172401000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
48 chr1:172400600-172401200 Enhancers Primary mononuclear cells fromperipheralblood Blood
49 chr1:172400600-172401200 Enhancers Rectal Mucosa Donor 29 rectum
50 chr1:172400600-172401400 Enhancers ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015