The 2.0 version of rSNPBase

Variant report

Variant rs9425604
Chromosome Location chr1:172384397-172384398
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:17 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172352400-172386400 Weak transcription Psoas Muscle Psoas
2 chr1:172368400-172390800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:172370200-172385600 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:172373000-172390800 Weak transcription Brain Hippocampus Middle brain
5 chr1:172373000-172390800 Weak transcription Brain Substantia Nigra brain
6 chr1:172373000-172411800 Weak transcription Brain Angular Gyrus brain
7 chr1:172377200-172384400 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:172378400-172385200 Weak transcription Fetal Kidney kidney
9 chr1:172379400-172386600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr1:172382200-172390800 Weak transcription Brain Inferior Temporal Lobe brain
11 chr1:172383000-172387600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:172383000-172388600 Enhancers NHEK skin
13 chr1:172383200-172385400 Weak transcription A549 lung
14 chr1:172383400-172387600 Enhancers HMEC breast
15 chr1:172383600-172384400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:172383800-172387200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:172384000-172384400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015