The 2.0 version of rSNPBase

Variant report

Variant rs4916186
Chromosome Location chr1:172396020-172396021
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172373000-172411800 Weak transcription Brain Angular Gyrus brain
2 chr1:172384400-172398400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:172385800-172411000 Weak transcription Fetal Stomach stomach
4 chr1:172391000-172410600 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:172391000-172412200 Weak transcription HSMMtube muscle
6 chr1:172391400-172398000 Weak transcription HUES6 Cell Line embryonic stem cell
7 chr1:172391400-172400800 Weak transcription Pancreas Pancrea
8 chr1:172391400-172409400 Weak transcription Fetal Muscle Trunk muscle
9 chr1:172391800-172396400 Weak transcription Fetal Lung lung
10 chr1:172391800-172411000 Weak transcription Spleen Spleen
11 chr1:172392000-172412200 Weak transcription Right Ventricle heart
12 chr1:172392200-172411000 Weak transcription Left Ventricle heart
13 chr1:172392400-172396200 Weak transcription Right Atrium heart
14 chr1:172392400-172400400 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr1:172392400-172400800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:172392400-172401000 Weak transcription Lung lung
17 chr1:172392800-172400200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:172393000-172396800 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:172394200-172396400 Enhancers K562 blood
20 chr1:172394600-172396400 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr1:172395400-172396200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:172395400-172397800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr1:172395600-172396200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:172395600-172397600 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:172395600-172412200 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr1:172395800-172396200 Enhancers Primary T cells fromperipheralblood blood
27 chr1:172395800-172396200 Enhancers Primary T killer memory cells from peripheral blood blood
28 chr1:172395800-172397000 Flanking Active TSS Dnd41 blood
29 chr1:172395800-172400600 Weak transcription iPS-15b Cell Line embryonic stem cell
30 chr1:172395800-172400600 Weak transcription iPS-18 Cell Line embryonic stem cell
31 chr1:172395800-172400600 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr1:172395800-172401000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr1:172395800-172402800 Enhancers Primary T killer naive cells fromperipheralblood blood
34 chr1:172396000-172396200 Enhancers Primary T helper cells fromperipheralblood blood
35 chr1:172396000-172396400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:172396000-172396600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:172396000-172396800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
38 chr1:172396000-172397000 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
39 chr1:172396000-172397200 Flanking Active TSS Primary T cells from cord blood blood
40 chr1:172396000-172397200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
41 chr1:172396000-172397200 Enhancers Primary T helper 17 cells PMA-I stimulated --
42 chr1:172396000-172397800 Enhancers Primary T regulatory cells fromperipheralblood blood
43 chr1:172396000-172397800 Enhancers Fetal Thymus thymus
44 chr1:172396000-172400800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015