Variant report

Variant	rs2795127
Chromosome Location	chr9:15478070-15478071
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10116904	0.83[EUR][1000 genomes]
rs10118595	0.83[EUR][1000 genomes]
rs10118675	0.83[EUR][1000 genomes]
rs10118719	0.81[EUR][1000 genomes]
rs10119931	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10120171	0.83[EUR][1000 genomes]
rs10121012	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10121911	0.83[EUR][1000 genomes]
rs10123084	0.83[EUR][1000 genomes]
rs10124718	0.83[EUR][1000 genomes]
rs10125713	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1041529	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12336383	0.82[AMR][1000 genomes]
rs12336445	0.82[AMR][1000 genomes]
rs12337310	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344963	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12348561	0.85[EUR][1000 genomes]
rs12348564	0.85[EUR][1000 genomes]
rs12348780	0.85[EUR][1000 genomes]
rs12350062	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12350903	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12352398	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12353048	0.85[EUR][1000 genomes]
rs12859	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1882939	0.97[EUR][1000 genomes]
rs2064030	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2221706	0.82[AMR][1000 genomes]
rs2382536	0.87[YRI][hapmap]
rs2665503	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2665510	0.97[EUR][1000 genomes]
rs2665511	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2665512	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2665515	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2737840	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276437	0.85[YRI][hapmap];0.82[AMR][1000 genomes]
rs276438	0.84[AMR][1000 genomes]
rs276445	0.91[AMR][1000 genomes]
rs276446	0.91[AMR][1000 genomes]
rs276450	0.87[YRI][hapmap];0.91[AMR][1000 genomes]
rs276451	0.87[YRI][hapmap];0.91[AMR][1000 genomes]
rs2777949	1.00[ASN][1000 genomes]
rs2777951	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2795123	0.97[EUR][1000 genomes]
rs2795124	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2795125	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2821525	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2821529	1.00[EUR][1000 genomes]
rs2821530	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2821533	0.97[EUR][1000 genomes]
rs2821542	0.84[AMR][1000 genomes]
rs2821543	0.91[AMR][1000 genomes]
rs2821544	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28497163	1.00[EUR][1000 genomes]
rs28610358	0.88[EUR][1000 genomes]
rs28659858	0.82[AMR][1000 genomes]
rs28796681	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28800775	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28805077	0.84[AMR][1000 genomes]
rs28808908	0.83[EUR][1000 genomes]
rs28844368	0.83[EUR][1000 genomes]
rs28882210	0.83[EUR][1000 genomes]
rs28893033	0.81[AMR][1000 genomes]
rs3119700	0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3122701	0.82[AMR][1000 genomes]
rs3122705	0.87[YRI][hapmap];0.91[AMR][1000 genomes]
rs3129711	0.91[AMR][1000 genomes]
rs365710	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs381205	0.84[AMR][1000 genomes]
rs392627	0.82[AMR][1000 genomes]
rs413356	0.91[AMR][1000 genomes]
rs415157	0.84[AMR][1000 genomes]
rs418153	0.91[AMR][1000 genomes]
rs4237140	0.82[AMR][1000 genomes]
rs443563	0.82[EUR][1000 genomes]
rs592452	0.84[AMR][1000 genomes]
rs7021840	0.91[EUR][1000 genomes]
rs741930	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852936	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7860339	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs796391	0.87[YRI][hapmap];0.91[AMR][1000 genomes]
rs811282	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs909323	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs926154	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9298729	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15439000-15492200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:15442600-15478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:15442600-15478600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
6	chr9:15443000-15482200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:15443200-15479600	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:15443200-15490400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr9:15443200-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:15443400-15479200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:15443800-15492200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:15444000-15482000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:15444000-15487600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:15444000-15492400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:15444400-15495200	Weak transcription	Fetal Heart	heart
16	chr9:15444600-15491200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:15444800-15482200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:15448200-15482200	Weak transcription	Psoas Muscle	Psoas
20	chr9:15448400-15480000	Weak transcription	Stomach Mucosa	stomach
21	chr9:15449000-15492200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:15449800-15509000	Weak transcription	Small Intestine	intestine
23	chr9:15452200-15480200	Weak transcription	Brain Substantia Nigra	brain
24	chr9:15452200-15492400	Weak transcription	Right Ventricle	heart
25	chr9:15454200-15478600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:15454600-15508600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:15456200-15480600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:15457000-15482000	Strong transcription	Dnd41	blood
29	chr9:15457000-15492400	Weak transcription	Lung	lung
30	chr9:15458200-15478200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr9:15459000-15492200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr9:15460800-15510000	Weak transcription	Esophagus	oesophagus
33	chr9:15461000-15492200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:15461600-15483800	Weak transcription	Fetal Intestine Small	intestine
35	chr9:15461600-15492400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:15461600-15492800	Weak transcription	Pancreas	Pancrea
37	chr9:15462200-15482200	Weak transcription	Brain Angular Gyrus	brain
38	chr9:15462400-15478600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr9:15462800-15505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:15463800-15478600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:15466200-15492400	Weak transcription	Gastric	stomach
42	chr9:15466600-15492400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:15467200-15501000	Weak transcription	Colon Smooth Muscle	Colon
44	chr9:15467400-15505600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:15468800-15480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:15468800-15482800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:15468800-15483800	Weak transcription	Fetal Stomach	stomach
48	chr9:15468800-15484400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:15468800-15484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:15468800-15492400	Weak transcription	Colonic Mucosa	Colon

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