Variant report

Variant	rs28424250
Chromosome Location	chr8:106034420-106034421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1521777	1.00[ASN][1000 genomes]
rs2030476	1.00[ASN][1000 genomes]
rs2342483	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs285778	1.00[ASN][1000 genomes]
rs285784	1.00[ASN][1000 genomes]
rs285800	1.00[ASN][1000 genomes]
rs285808	1.00[ASN][1000 genomes]
rs285817	1.00[ASN][1000 genomes]
rs285818	1.00[ASN][1000 genomes]
rs285821	1.00[ASN][1000 genomes]
rs285830	1.00[ASN][1000 genomes]
rs285831	1.00[ASN][1000 genomes]
rs285875	1.00[ASN][1000 genomes]
rs28700873	1.00[ASN][1000 genomes]
rs364605	1.00[ASN][1000 genomes]
rs367858	1.00[ASN][1000 genomes]
rs398324	1.00[ASN][1000 genomes]
rs72676195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106034200-106035600	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links