Variant report
| Variant | rs285875 |
|---|---|
| Chromosome Location | chr8:106055586-106055587 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106021613..106024219-chr8:106053554..106055959,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240271 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1521777 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2030476 | 1.00[ASN][1000 genomes] |
| rs2342483 | 1.00[ASN][1000 genomes] |
| rs28424250 | 1.00[ASN][1000 genomes] |
| rs285778 | 1.00[ASN][1000 genomes] |
| rs285784 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285800 | 1.00[ASN][1000 genomes] |
| rs285808 | 1.00[ASN][1000 genomes] |
| rs285817 | 1.00[ASN][1000 genomes] |
| rs285818 | 1.00[ASN][1000 genomes] |
| rs285821 | 0.84[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285830 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285831 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285844 | 0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28700873 | 1.00[ASN][1000 genomes] |
| rs364605 | 1.00[ASN][1000 genomes] |
| rs367858 | 1.00[ASN][1000 genomes] |
| rs398324 | 1.00[ASN][1000 genomes] |
| rs72676195 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv891253 | chr8:105994885-106251476 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv982139 | chr8:106041388-106058113 | ZNF genes & repeats Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106051800-106058200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
