Variant report

Variant	rs285821
Chromosome Location	chr8:106102954-106102955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106095744..106098544-chr8:106100840..106104392,3	K562	blood:
2	chr8:106102491..106104440-chr8:106106753..106108347,2	MCF-7	breast:
3	chr8:106098062..106099625-chr8:106102482..106104994,2	MCF-7	breast:
4	chr8:106087603..106090110-chr8:106101395..106103199,2	K562	blood:
5	chr8:106098685..106100875-chr8:106101996..106103590,2	K562	blood:
6	chr8:106102068..106103875-chr8:106586214..106588552,2	K562	blood:
7	chr8:106101009..106105530-chr8:106328930..106333222,5	K562	blood:

Variant related genes	Relation type
ENSG00000169946	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1521777	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2030476	1.00[ASN][1000 genomes]
rs2342483	1.00[ASN][1000 genomes]
rs28424250	1.00[ASN][1000 genomes]
rs285778	1.00[ASN][1000 genomes]
rs285784	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285797	0.87[EUR][1000 genomes]
rs285800	1.00[ASN][1000 genomes]
rs285808	1.00[ASN][1000 genomes]
rs285817	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285818	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285832	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs285844	1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes]
rs285875	0.84[CEU][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28700873	1.00[ASN][1000 genomes]
rs364605	1.00[ASN][1000 genomes]
rs367858	1.00[ASN][1000 genomes]
rs398324	1.00[ASN][1000 genomes]
rs72676195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762763	chr8:105943295-106218634	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891253	chr8:105994885-106251476	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891254	chr8:106060970-106175867	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs285821	ZNF706	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106101600-106103800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:106101800-106103400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:106101800-106103400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:106101800-106103400	Enhancers	NH-A	brain
5	chr8:106102000-106103200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:106102200-106103200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:106102200-106103200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:106102200-106103400	Enhancers	Fetal Heart	heart
9	chr8:106102200-106105000	Enhancers	Fetal Brain Male	brain
10	chr8:106102400-106103000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:106102400-106103000	Flanking Active TSS	Fetal Brain Female	brain
12	chr8:106102400-106103000	Active TSS	Right Ventricle	heart
13	chr8:106102400-106103000	Active TSS	Stomach Smooth Muscle	stomach
14	chr8:106102400-106103000	Enhancers	K562	blood
15	chr8:106102400-106103400	Enhancers	HUVEC	blood vessel
16	chr8:106102400-106104000	Enhancers	Rectal Smooth Muscle	rectum
17	chr8:106102600-106103000	Active TSS	Ovary	ovary
18	chr8:106102600-106103000	Active TSS	Right Atrium	heart
19	chr8:106102600-106103000	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr8:106102600-106104000	Enhancers	Fetal Lung	lung
21	chr8:106102600-106104200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:106102800-106103000	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr8:106102800-106103000	Flanking Active TSS	Aorta	Aorta
24	chr8:106102800-106103600	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links