Variant report
| Variant | rs72676195 |
|---|---|
| Chromosome Location | chr8:105991869-105991870 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243939 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10104507 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1521777 | 1.00[ASN][1000 genomes] |
| rs17273800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17274046 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2030476 | 1.00[ASN][1000 genomes] |
| rs2342483 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28424250 | 1.00[ASN][1000 genomes] |
| rs285778 | 1.00[ASN][1000 genomes] |
| rs285784 | 1.00[ASN][1000 genomes] |
| rs285800 | 1.00[ASN][1000 genomes] |
| rs285808 | 1.00[ASN][1000 genomes] |
| rs285817 | 1.00[ASN][1000 genomes] |
| rs285818 | 1.00[ASN][1000 genomes] |
| rs285821 | 1.00[ASN][1000 genomes] |
| rs285830 | 1.00[ASN][1000 genomes] |
| rs285831 | 1.00[ASN][1000 genomes] |
| rs285875 | 1.00[ASN][1000 genomes] |
| rs28700873 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs364605 | 1.00[ASN][1000 genomes] |
| rs367858 | 1.00[ASN][1000 genomes] |
| rs398324 | 1.00[ASN][1000 genomes] |
| rs4734838 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1026754 | chr8:105382508-106030916 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv539709 | chr8:105382508-106030916 | Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032476 | chr8:105609904-106030916 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv539710 | chr8:105609904-106030916 | Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
