Variant report
| Variant | rs285808 |
|---|---|
| Chromosome Location | chr8:106124820-106124821 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106115361..106119364-chr8:106123346..106125677,3 | K562 | blood: | |
| 2 | chr8:106124060..106126969-chr8:106126998..106128732,2 | K562 | blood: | |
| 3 | chr8:106122701..106124864-chr8:106382103..106383677,2 | K562 | blood: | |
| 4 | chr8:106124290..106126979-chr8:106301850..106304617,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1521777 | 1.00[ASN][1000 genomes] |
| rs2030476 | 1.00[ASN][1000 genomes] |
| rs2342483 | 1.00[ASN][1000 genomes] |
| rs28416615 | 0.82[AMR][1000 genomes] |
| rs28424250 | 1.00[ASN][1000 genomes] |
| rs285778 | 1.00[ASN][1000 genomes] |
| rs285784 | 1.00[ASN][1000 genomes] |
| rs285800 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285817 | 1.00[ASN][1000 genomes] |
| rs285818 | 1.00[ASN][1000 genomes] |
| rs285821 | 1.00[ASN][1000 genomes] |
| rs285830 | 1.00[ASN][1000 genomes] |
| rs285831 | 1.00[ASN][1000 genomes] |
| rs285875 | 1.00[ASN][1000 genomes] |
| rs28700873 | 1.00[ASN][1000 genomes] |
| rs364605 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs367858 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs398324 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72676195 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv891253 | chr8:105994885-106251476 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv891254 | chr8:106060970-106175867 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106124200-106125200 | Enhancers | K562 | blood |
