Variant report
Variant | rs285830 |
---|---|
Chromosome Location | chr8:106099416-106099417 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:106098062..106099625-chr8:106102482..106104994,2 | MCF-7 | breast: | |
2 | chr8:106098685..106100875-chr8:106101996..106103590,2 | K562 | blood: | |
3 | chr8:106094210..106096629-chr8:106098616..106100274,3 | K562 | blood: | |
4 | chr8:106082822..106084651-chr8:106097372..106099591,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1521777 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2030476 | 1.00[ASN][1000 genomes] |
rs2342483 | 1.00[ASN][1000 genomes] |
rs28424250 | 1.00[ASN][1000 genomes] |
rs285778 | 1.00[ASN][1000 genomes] |
rs285784 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs285797 | 0.87[EUR][1000 genomes] |
rs285800 | 1.00[ASN][1000 genomes] |
rs285808 | 1.00[ASN][1000 genomes] |
rs285817 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs285818 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs285821 | 0.92[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs285831 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs285832 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs285844 | 0.85[AMR][1000 genomes] |
rs285875 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs28700873 | 1.00[ASN][1000 genomes] |
rs364605 | 1.00[ASN][1000 genomes] |
rs367858 | 1.00[ASN][1000 genomes] |
rs398324 | 1.00[ASN][1000 genomes] |
rs72676195 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2762763 | chr8:105943295-106218634 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv891253 | chr8:105994885-106251476 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv891254 | chr8:106060970-106175867 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:106092600-106102400 | Weak transcription | K562 | blood |