Variant report

Variant	rs28523760
Chromosome Location	chr3:102022475-102022476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102021277..102023313-chr3:102025316..102027142,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10048918	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926310	1.00[ASN][1000 genomes]
rs13314775	1.00[ASN][1000 genomes]
rs1435209	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558223	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626707	1.00[ASN][1000 genomes]
rs67420248	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73157661	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290688	1.00[ASN][1000 genomes]
rs9812893	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814988	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815746	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822597	1.00[ASN][1000 genomes]
rs9823926	1.00[ASN][1000 genomes]
rs9826330	1.00[ASN][1000 genomes]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9847260	1.00[ASN][1000 genomes]
rs9854091	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862645	1.00[ASN][1000 genomes]
rs9862862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863666	1.00[ASN][1000 genomes]
rs9863720	1.00[ASN][1000 genomes]
rs9866230	1.00[ASN][1000 genomes]
rs9869800	1.00[ASN][1000 genomes]
rs9872995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873657	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880301	1.00[ASN][1000 genomes]
rs9882177	1.00[ASN][1000 genomes]
rs9883750	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102020400-102023400	Weak transcription	HMEC	breast
2	chr3:102021200-102026000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:102021600-102022600	Enhancers	Pancreatic Islets	Pancreatic Islet

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