Variant report

Variant	rs13314775
Chromosome Location	chr3:102120654-102120655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102115274..102117462-chr3:102120586..102123538,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10048918	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10212280	1.00[CHB][hapmap]
rs1025587	1.00[CHB][hapmap]
rs11708991	1.00[CHB][hapmap]
rs11721106	1.00[CHB][hapmap]
rs11926310	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12330429	1.00[CHB][hapmap]
rs13317566	1.00[CHB][hapmap]
rs13318339	1.00[CHB][hapmap]
rs13320972	1.00[CHB][hapmap];0.90[GIH][hapmap]
rs1435209	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs1479367	1.00[CHB][hapmap]
rs1479368	1.00[CHB][hapmap]
rs1479369	1.00[CHB][hapmap]
rs1479371	1.00[CHB][hapmap]
rs1479372	1.00[CHB][hapmap]
rs16844949	1.00[CHB][hapmap]
rs16844965	1.00[CHB][hapmap]
rs16844969	1.00[CHB][hapmap]
rs16844973	1.00[CHB][hapmap]
rs2127287	1.00[CHB][hapmap]
rs2127289	1.00[CHB][hapmap]
rs2398725	1.00[CHB][hapmap]
rs28523760	1.00[ASN][1000 genomes]
rs28558223	1.00[ASN][1000 genomes]
rs28626707	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635682	1.00[CHB][hapmap]
rs6441658	1.00[CHB][hapmap]
rs6441659	1.00[CHB][hapmap]
rs6441660	1.00[CHB][hapmap]
rs6441661	1.00[CHB][hapmap]
rs67420248	1.00[ASN][1000 genomes]
rs6768032	1.00[CHB][hapmap]
rs6768311	1.00[CHB][hapmap]
rs6771629	1.00[CHB][hapmap]
rs6772839	1.00[CHB][hapmap]
rs6778404	1.00[CHB][hapmap]
rs6781453	1.00[CHB][hapmap]
rs6781765	1.00[CHB][hapmap]
rs6786800	1.00[CHB][hapmap]
rs73157661	1.00[ASN][1000 genomes]
rs7616427	1.00[CHB][hapmap]
rs7619156	1.00[CHB][hapmap]
rs7621246	1.00[CHB][hapmap]
rs7623736	1.00[CHB][hapmap]
rs7636808	1.00[CHB][hapmap]
rs7650734	1.00[CHB][hapmap]
rs7652085	1.00[CHB][hapmap]
rs9290688	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812893	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9814988	1.00[ASN][1000 genomes]
rs9815746	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9819718	1.00[CHB][hapmap]
rs9821512	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9822597	1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822998	1.00[CHB][hapmap]
rs9823926	1.00[ASN][1000 genomes]
rs9825736	1.00[CHB][hapmap]
rs9826330	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828984	1.00[CHB][hapmap]
rs9829127	1.00[CHB][hapmap]
rs9834628	1.00[CHB][hapmap]
rs9835728	1.00[CHB][hapmap]
rs9840010	1.00[ASN][1000 genomes]
rs9842508	1.00[ASN][1000 genomes]
rs9843713	1.00[CHB][hapmap]
rs9847260	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985375	1.00[CHB][hapmap]
rs9854091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9860680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9862517	1.00[CHB][hapmap]
rs9862645	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9862862	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs9863666	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[ASN][1000 genomes]
rs9863720	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864968	1.00[CHB][hapmap]
rs9865839	1.00[CHB][hapmap]
rs9866230	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868222	1.00[CHB][hapmap]
rs9869334	1.00[CHB][hapmap]
rs9869800	1.00[ASN][1000 genomes]
rs9872995	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9873657	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9880301	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882177	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9883410	1.00[CHB][hapmap]
rs9883750	1.00[ASN][1000 genomes]
rs9883780	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102118400-102120800	Enhancers	Hela-S3	cervix
2	chr3:102118600-102121000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:102118800-102121400	Enhancers	NHEK	skin
4	chr3:102119000-102120800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:102119000-102120800	Enhancers	HSMM	muscle
6	chr3:102119200-102120800	Enhancers	NH-A	brain
7	chr3:102120200-102120800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:102120400-102121000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:102120400-102121600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:102120600-102134000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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